View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_32 (Length: 209)
Name: NF17330_high_32
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 12695582 - 12695759
Alignment:
| Q |
17 |
agcatacatgtcttattggatcagaaattaaccaacaataacaacaacaatcaagtctttttctaataagtgagttcgactacgcgacgaattggatcag |
116 |
Q |
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| T |
12695582 |
agcatacatgtcttattggatcggaaattaaccaacaataacaacaacaatcaagtctttttctaataagtgagttcgactacgcgacgaattggatcag |
12695681 |
T |
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| Q |
117 |
aaaccaaccaattgcattatttcattgaggaannnnnnnnccattccacaaacatttgacagggttaagttgacaaacc |
195 |
Q |
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| T |
12695682 |
aaaccaaccaattgcattatttcattgaggaa-tttttttccattccacaaacatttgacagggctaagttgacaaacc |
12695759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 12688882 - 12689065
Alignment:
| Q |
17 |
agcatacatgtcttattggatcagaaattaaccaacaat------aacaacaacaatcaagtctttttctaataagtgagttcgactacgcgacgaattg |
110 |
Q |
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|||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||||| |||| ||| | ||||||| |
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| T |
12688882 |
agcatacatgtcttattggatcggaaaccaaccaacaatgacaacaacaacaacaatcaagtctttttctactaagtgagatcgattacatgtcgaattg |
12688981 |
T |
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| Q |
111 |
gatcagaaaccaaccaattgcattatttcattgaggaannnnnnnnccattccacaaacatttgacagggttaagttgacaaacc |
195 |
Q |
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||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||| || |||||||| ||||| |
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| T |
12688982 |
gatcagaaatcaaccaactgcattatttcattgatgaa-attttttccattccacaaacatttgacatggctaagttgaaaaacc |
12689065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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