View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_4 (Length: 611)
Name: NF17330_high_4
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 40742261 - 40742017
Alignment:
| Q |
16 |
caaataccacttttgatataccatacatgattttagaacataaaagaagaatcaattggtcttaaacttcatttccaacatagaacacatgcaatgcatg |
115 |
Q |
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| T |
40742261 |
caaataccacttttgatataccatacatgattttagaacataaaagaagaatcaattggtcttaaacttcatttccaacatagaacacatgaaatgcatg |
40742162 |
T |
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| Q |
116 |
atgacaaaagctggtctaccgaaaaatctgggcaacaaaggttgatttggtgg-aaaatctcaattgattttgttgccataaatacatttattcatgcta |
214 |
Q |
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| T |
40742161 |
atgacaaaagctggtctatcgaaaaatctgggcaacaaaggttgacttggcggaaaaatctcaattgattttgttgccatagatacatttattcatgcta |
40742062 |
T |
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| Q |
215 |
acaattttagtagtcgaacagatcaacttcagtcaagaacgaggt |
259 |
Q |
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| T |
40742061 |
acaattttagtagtcgaacagatcaacttcggtcaagaacgaggt |
40742017 |
T |
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