View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_10 (Length: 416)
Name: NF17330_low_10
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 34760050 - 34759642
Alignment:
| Q |
1 |
ggtagacgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttctt |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
34760050 |
ggtagacgtaagcataagctttcctagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgaccacatcattggctgcattctttctt |
34759951 |
T |
|
| Q |
101 |
ttctttctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggacca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34759950 |
ttctttctactaagagtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggacca |
34759851 |
T |
|
| Q |
201 |
ttcttcgaacaagataagnnnnnnntgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctttcaatg |
300 |
Q |
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| T |
34759850 |
ttcttcgaacaagataagaaaaaaatgctttgtagactttgtcgatagggtacttattgatctgaatagtgcgcagatcggaagtttttctctttcaatg |
34759751 |
T |
|
| Q |
301 |
ttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaaaaaatatttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34759750 |
ttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaaaaaatatttg |
34759651 |
T |
|
| Q |
401 |
cgtcctttg |
409 |
Q |
| |
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||||||||| |
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| T |
34759650 |
cgtcctttg |
34759642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 34747616 - 34747228
Alignment:
| Q |
1 |
ggtagacgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttctt |
100 |
Q |
| |
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|||||| |||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||| || || ||| ||||||||| |
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| T |
34747616 |
ggtagatgtaagcataagctttctaagaggcaaaaatccaacaagggacaagacttgataagcaacctacctgaccacattattggttgcgttctttctt |
34747517 |
T |
|
| Q |
101 |
ttctttctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacat---gga |
197 |
Q |
| |
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||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||| |||| ||| |||| ||||||| ||||| | | |
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| T |
34747516 |
ttcttcctactaaggatgcagtttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttgatgacatagggta |
34747417 |
T |
|
| Q |
198 |
ccattcttcgaacaagataagnnnnnnntgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctttca |
297 |
Q |
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|||||| ||| ||||||| ||||||| ||||||||| ||||||||||| ||| |||||||||| || ||| |||||||||||||| | |
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| T |
34747416 |
ttgttcttccaacgagataagaaaagcatgctttgtagactttgtagatagggtactgcttcgactgaatagtgaacacatccgaagtttttctcttaaa |
34747317 |
T |
|
| Q |
298 |
atgttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgca |
386 |
Q |
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|||| ||||| ||| | ||||| |||||| | ||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||||| |
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| T |
34747316 |
atgtccgagaagtatgactcttcctatattaacaagtggatatccatcgttataaatctgagagtcagaaagcttcgcgtctatttgca |
34747228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 34743052 - 34742853
Alignment:
| Q |
1 |
ggtagacgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttctt |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||| || |||||||||||| | | ||||||||||||||||||||| ||||||||| || || ||||||||||||| |
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| T |
34743052 |
ggtagacgtaagcgtaagctttctaagatgcaaaaatccagcaaaggttaagacttgataagcaacctacctgaccacattattggttgcattctttctt |
34742953 |
T |
|
| Q |
101 |
ttctttctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggacca |
200 |
Q |
| |
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||||| || ||||| ||| ||| ||| | ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
34742952 |
ttcttcatattaaggaagcaatttgtaccagcgttttatcaaagaggtggatatccctctggaaaattatcacccgactaaattttgacgacatggacca |
34742853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 34755953 - 34755761
Alignment:
| Q |
1 |
ggtagacgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttctt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| |||| ||||| ||||||||||||||||||||||| ||||||||| || || | |||||||| || |
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| T |
34755953 |
ggtagacgtaagcataagctttctaagaggcaaaattccatcaagggtcaagacttgataagcaacctacctgaccacattattggttacattctttttt |
34755854 |
T |
|
| Q |
101 |
ttctttctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgaca |
193 |
Q |
| |
|
||||| ||||||||| |||||| |||| | ||||||||||||| ||||||| |||||||||||||| |||| |||| |||||||||||| |
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| T |
34755853 |
ttcttcctactaaggaagcagttcgtactagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgaca |
34755761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 294
Target Start/End: Complemental strand, 34752214 - 34751954
Alignment:
| Q |
37 |
tccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttcttttctttctactaagggtgcagtttctacttgtgttt |
136 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||| || || | |||||||| ||||||||||||||||| |||||| ||| | |||| |
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| T |
34752214 |
tccagcaagggtcaagacttgataagcaacctaccagaccacattattggttacattctttattttctttctactaaggaagcagttcgtaccagcgttt |
34752115 |
T |
|
| Q |
137 |
tatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggacca---ttcttcgaacaagataagnnnnnnntgctttgc |
233 |
Q |
| |
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||||||||| ||||||| |||||||||||||| |||| |||| |||||||||||| | |||| ||||| |||||||||||| |||||| |
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| T |
34752114 |
tatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgacaagaaccatttttctttgaacaagataagaaaaaaaggctttgt |
34752015 |
T |
|
| Q |
234 |
agactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctt |
294 |
Q |
| |
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||||||||| ||||||||||| ||| ||||||||||||| || ||| ||||||||||||| |
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|
| T |
34752014 |
agactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctctt |
34751954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 34751902 - 34751849
Alignment:
| Q |
331 |
aagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttg |
384 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
34751902 |
aagtggatatctgtggttgtaaatctgagagtcagaaatctttgtatctatttg |
34751849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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