View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_11 (Length: 415)
Name: NF17330_low_11
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 48740345 - 48740742
Alignment:
| Q |
1 |
aaatgataaagatatttaagatggattagaccataacaatgattgaatagatattaattaaaagtactaatttcatagtttgtcattatgacggatgaca |
100 |
Q |
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| T |
48740345 |
aaatgataaagatatttaagatggattagaccataacaatgattgaatagatattaattaaaagtactaatttcatagtttgtcattatgacggatgaca |
48740444 |
T |
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| Q |
101 |
tgagtcgttacgaataaaagtgacccctaataaatcaaagaatcaaagttagagagaatttcaactctagggagactttatgaaattgggtaaagaatat |
200 |
Q |
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| T |
48740445 |
tgagtcgttacgaataaaagtgacccctaataaatcaaagaatcaaagttagagagaatttcaactctagggagactttatgaaattgggtaaagaatat |
48740544 |
T |
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| Q |
201 |
attttgatgtaataaatcagaataaaaagtgaagcatcaagggtggacataacatgtaacatgatgccaaaaactaaagatattcccattttaatctc-n |
299 |
Q |
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| T |
48740545 |
attttgatgtaataaatcagaataaaaagtgaagcatcaagggtggacataacatgtaacatgatgccaaaaactaaagatattccccttttaatctctt |
48740644 |
T |
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| Q |
300 |
nnnnnnctcaatatgtttgctatacgaaggaaactaattgctcaaggtagatataatatggaatcagctgcgtcacaagcagcaaatagagaatatgc |
397 |
Q |
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| T |
48740645 |
tattttctcaatatgtttgctatacgaaggaaactaatcgctcaaggtagatataatatggaatcagctgcgtcacaagcagcaaatagagaatatgc |
48740742 |
T |
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