View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17330_low_13 (Length: 382)

Name: NF17330_low_13
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17330_low_13
NF17330_low_13
[»] scaffold0216 (1 HSPs)
scaffold0216 (18-359)||(13871-14212)
[»] scaffold0807 (2 HSPs)
scaffold0807 (95-373)||(3375-3647)
scaffold0807 (18-67)||(3333-3382)


Alignment Details
Target: scaffold0216 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 14212 - 13871
Alignment:
Q  18 attttcttggtcatgtatcaactatatattgagaaagttgtatttaactaataattacaccggtgacttaataattgtttaaatacattaaacctgtctt 117  Q
    |||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14212 attttcttggtcatttattaactataaattgagaaagttggatttaactaataattacaccggtgacttaataattgtttaaatacattaaacctgtctt 14113  T
Q  118 tgttagttggaaacatgcaaacatgttcaatatttcccatattcattgcgggtctacggaggttaagtgtctaaattacgtgttttggacttcaatttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14112 tgttagttggaaacatgcaaacatgttcaatatttcccatattcattgcgggtctacagaggttaagtgtctaaattacgtgttttggacttcaatttca 14013  T
Q  218 aatttgacattttgtgttcacattaccgtagcatctatataagcatagacctttacaaaatgaaagaaaaacatctcatatcctttttgttaaatagaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14012 aatttgacattttgtgttcacattaccgtagcatctatataagcatagaactttacaaactgaaagaaaaacatctcatatcctttttgttaaatagaat 13913  T
Q  318 acagaaataaaaaacaatcattcaagaaaaatgccagatagt 359  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  13912 acagaaataaaaaacaatcattcaagaaaaatgtcagctagt 13871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 95 - 373
Target Start/End: Original strand, 3375 - 3647
Alignment:
Q  95 tttaaatacattaaacctgtctttgttagttggaaacatgcaaacatgttcaatatttcccatattcattgcgggtctacggaggttaagtgtctaaatt 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          |||||||||||||     
T  3375 tttaactacattaaacctgtctttgttagttggaaacatgcaaacatgttcaatatctcccatattcattgcgggt----------taagtgtctaaata 3464  T
Q  195 acgtgttttggacttcaatttcaaatttgacattttgtgttcacattaccgtagcatctatataagc----atagacctttacaaaatgaaagaaaaaca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||    
T  3465 acgtgttttggacttcaatttcaaatttgacattttgtgttcacattaccgtagcatctatataagctagcatagacctttacaaactgaaagaaaaaca 3564  T
Q  291 tctcatatcctttttgttaaatagaatacagaaataaaaaacaatcattcaagaaaaatgccagatagtctcacaggttctgc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  3565 tctcatatcctttttgttaaatagaatacagaaataaaaaacaatcattcaagaaaaatgccagctagtctcataggtgctgc 3647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 3333 - 3382
Alignment:
Q  18 attttcttggtcatgtatcaactatatattgagaaagttgtatttaacta 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3333 attttcttggtcatgtatcaactatatattgagaaagttgtatttaacta 3382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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