View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17330_low_14 (Length: 380)

Name: NF17330_low_14
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17330_low_14
NF17330_low_14
[»] scaffold0568 (4 HSPs)
scaffold0568 (16-253)||(2205-2442)
scaffold0568 (16-253)||(8807-9044)
scaffold0568 (316-365)||(2505-2554)
scaffold0568 (316-365)||(9107-9156)
[»] chr4 (3 HSPs)
chr4 (16-251)||(17060229-17060464)
chr4 (316-365)||(17060530-17060579)
chr4 (28-72)||(18198940-18198984)
[»] chr2 (2 HSPs)
chr2 (79-172)||(29158097-29158190)
chr2 (35-82)||(28658640-28658687)
[»] chr1 (3 HSPs)
chr1 (201-253)||(48223874-48223926)
chr1 (316-365)||(48223997-48224046)
chr1 (35-82)||(20264808-20264855)
[»] scaffold0576 (1 HSPs)
scaffold0576 (28-82)||(4537-4591)
[»] chr8 (1 HSPs)
chr8 (28-82)||(3734086-3734140)
[»] chr7 (1 HSPs)
chr7 (28-82)||(2751955-2752009)
[»] chr6 (1 HSPs)
chr6 (28-82)||(15359553-15359607)
[»] scaffold0002 (1 HSPs)
scaffold0002 (28-72)||(288813-288857)


Alignment Details
Target: scaffold0568 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 2205 - 2442
Alignment:
Q  16 aatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttaataacttattgtttcttgaagagtatggtaatgcactggaagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  2205 aatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagc 2304  T
Q  116 ctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaattttgacaggttctggnnnnnnngtgttcgcaggttctg 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  2305 ctacctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaattttgacaggttctggtttttttgtgttcgcaggttctg 2404  T
Q  216 tttgctgttttggtgggtgctgccttctgttaggggcg 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2405 tttgctgttttggtgggtgctgccttctgttaggggcg 2442  T

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Target: scaffold0568; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 8807 - 9044
Alignment:
Q  16 aatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttaataacttattgtttcttgaagagtatggtaatgcactggaagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  8807 aatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagc 8906  T
Q  116 ctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaattttgacaggttctggnnnnnnngtgttcgcaggttctg 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  8907 ctacctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaattttgacaggttctggtttttttgtgttcgcaggttctg 9006  T
Q  216 tttgctgttttggtgggtgctgccttctgttaggggcg 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9007 tttgctgttttggtgggtgctgccttctgttaggggcg 9044  T

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Target: scaffold0568; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 2505 - 2554
Alignment:
Q  316 ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttat 365  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  2505 ggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttat 2554  T

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Target: scaffold0568; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 9107 - 9156
Alignment:
Q  316 ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttat 365  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  9107 ggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttat 9156  T

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Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 17060229 - 17060464
Alignment:
Q  16 aatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttaataacttattgtttcttgaagagtatggtaatgcactggaagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  17060229 aatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggcaatgcactggaagc 17060328  T
Q  116 ctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaattttgacaggttctggnnnnnnngtgttcgcaggttctg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||       ||||||||||||||||    
T  17060329 ctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaattttgaccggttatggtttttttgtgttcgcaggttctg 17060428  T
Q  216 tttgctgttttggtgggtgctgccttctgttagggg 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  17060429 tttgctgttttggtgggtgctgccttctgttagggg 17060464  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 17060530 - 17060579
Alignment:
Q  316 ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttat 365  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17060530 ggttcagcacgtgttggtgtggttgggggcttggtttggtgcggtgttat 17060579  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 18198940 - 18198984
Alignment:
Q  28 tttaagtatttaagtgtttacactgacattactttgtacttctta 72  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
T  18198940 tttaaggatttaagcgtttacactgacattattttgtacttctta 18198984  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 29158097 - 29158190
Alignment:
Q  79 tattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgc 172  Q
    ||||||||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  29158097 tattgtttcttcaagagcaaggtaatgcattggaagcctacctgttgccaatatttgacccaaatatatctcccagaaatgtggctataattgc 29158190  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 28658640 - 28658687
Alignment:
Q  35 atttaagtgtttacactgacattactttgtacttcttaataacttatt 82  Q
    ||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  28658640 atttaagtggttacactgacattattttgtacttcttagtagcttatt 28658687  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 48223874 - 48223926
Alignment:
Q  201 tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48223874 tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaagggcg 48223926  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 48223997 - 48224046
Alignment:
Q  316 ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttat 365  Q
    ||||||||||||||||||||| ||||||||| ||||||||| || |||||    
T  48223997 ggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggcgttat 48224046  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 20264808 - 20264855
Alignment:
Q  35 atttaagtgtttacactgacattactttgtacttcttaataacttatt 82  Q
    ||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  20264808 atttaagtggttacactgacattattttgtacttcttagtagcttatt 20264855  T

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Target: scaffold0576 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 4537 - 4591
Alignment:
Q  28 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 82  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  4537 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 4591  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 3734086 - 3734140
Alignment:
Q  28 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 82  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  3734086 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 3734140  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 2752009 - 2751955
Alignment:
Q  28 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 82  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  2752009 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 2751955  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 15359553 - 15359607
Alignment:
Q  28 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 82  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  15359553 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 15359607  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 288857 - 288813
Alignment:
Q  28 tttaagtatttaagtgtttacactgacattactttgtacttctta 72  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
T  288857 tttaaggatttaagcgtttacactgacattattttgtacttctta 288813  T

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