View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_15 (Length: 379)
Name: NF17330_low_15
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_15 |
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| [»] scaffold0046 (2 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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Alignment Details
Target: scaffold0046 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 24605 - 24344
Alignment:
| Q |
1 |
agattcaacatcaattcatctctccactatccctctctatctcataattaattaacaaaaactcaagaacggattgaaaaagaaaattccagaacatgat |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24605 |
agattcaacatcaattcatctctccactatccccctctatctcataattaattaacaaaaactcaagaacggattgaaaaagaaaattccagaacatgat |
24506 |
T |
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| Q |
101 |
tttcaatttcattatgggtctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaaca |
200 |
Q |
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| T |
24505 |
tttcaatttcattatgggtctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaaca |
24406 |
T |
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| Q |
201 |
tgttcaaagttcaaacctttcaattcaaatcttgactcatcacttcttgaaaaaaattgaaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24405 |
tgttcaaagttcaaacctttcaattcaaatcttgactcatcacttcttgaaaaaaattgaaa |
24344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 24318 - 24269
Alignment:
| Q |
320 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
369 |
Q |
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| T |
24318 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
24269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 12032 - 12413
Alignment:
| Q |
1 |
agattcaacatcaattcatctctccactatccctctctatctcataattaattaacaaaaactcaagaacggattgaaaaagaaaattccagaacatgat |
100 |
Q |
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| T |
12032 |
agattcaacatcaattcatctctccactattcccctctatctcataattaattaacaaaaactcaagaacggattgaaaaagaaaaacccagaacatgat |
12131 |
T |
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| Q |
101 |
tttcaatttcattatgggtctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaaca |
200 |
Q |
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| T |
12132 |
tttcaatttcattatgggtctcatagccacacaaaccaccacattaatcttgaatcatgcataccaccaccaccacaatccctcttaaaactcatcaaca |
12231 |
T |
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| Q |
201 |
tgttcaaagttcaaacctttcaattcaaatcttgactcatcacttcttgaaaaaaattgaaattgannnnnnnnnnnnnaatcagcaaaattgaaactga |
300 |
Q |
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| T |
12232 |
tgttcaaagtccaaacctttcaattcaaatcttgactcaccacttcttgaaaaaaattgaaactga-ttttgttttttgaatcagcaaaattgaaactga |
12330 |
T |
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| Q |
301 |
ttgaattc--------------ttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
369 |
Q |
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| T |
12331 |
ttgaattcaattgaggttgttgttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
12413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 43895407 - 43895147
Alignment:
| Q |
1 |
agattcaacatcaattcatctctccactatccctctctatctcataattaattaacaaaaactcaagaacggattgaaaaagaaaattccagaacatgat |
100 |
Q |
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||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||||| ||| |
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| T |
43895407 |
agatttaatatcaattcatctctccactatccccctctatctcataattaatcaacaaaaacacaggaacggattgaaaaagaaaaatccagaacaagat |
43895308 |
T |
|
| Q |
101 |
tttcaatttcattatgggtctcatagccacacaaaccaccacacta---------atcttgactcatgcataccaccaccaccacaatccctcttaaaac |
191 |
Q |
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| T |
43895307 |
tttcaattttattatgggtctcatagccac---aaccaccacactaatcttactgatcttgaatcatgcataccaccaccatcacaatccctcttaaaac |
43895211 |
T |
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| Q |
192 |
tcatcaacatgttcaaagttcaaacctttcaattcaaatcttgactcatcacttcttgaaaaaa |
255 |
Q |
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| T |
43895210 |
tcatcaacatgttcaaagtccaaacctttcaattcaaatcttgactcaccgcttcttgaaaaaa |
43895147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 43895072 - 43895011
Alignment:
| Q |
308 |
cttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
369 |
Q |
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| T |
43895072 |
cttggagaatgtttaatccgataattccgatggatgattttggtgctggtttttatcctttg |
43895011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 52 - 261
Target Start/End: Original strand, 17345689 - 17345906
Alignment:
| Q |
52 |
ttaacaaaaactcaagaacggattgaaaaagaaaatt-ccagaacatgat-------tttcaatttcattatgggtctcatagccacacaaaccaccaca |
143 |
Q |
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||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17345689 |
ttaacaaaaactcaagagctgattgaaaaagaaaaaaaccagaacatgatgatttaatttcaatttcattatgggtctcatagccacacaaaccaccaca |
17345788 |
T |
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| Q |
144 |
ctaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctttcaattcaaatcttgactcatcac |
243 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| || ||| ||||||||| |||||||||||| ||||| ||| |
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| T |
17345789 |
ctaatcttgactcacgcataccatcaccaccacaatccctcttacaacacatcaacatgtccatagtccaaacctttgaattcaaatcttcactcaccac |
17345888 |
T |
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| Q |
244 |
ttcttgaaaaaaattgaa |
261 |
Q |
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|||||||||||||||||| |
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| T |
17345889 |
ttcttgaaaaaaattgaa |
17345906 |
T |
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