View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_16 (Length: 374)
Name: NF17330_low_16
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 11681532 - 11681305
Alignment:
| Q |
16 |
atagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaac--ggaccagcacaccaaaacagaacagcaa |
113 |
Q |
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| T |
11681532 |
atagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaacaggggccagcacaccaaaacagaacagcaa |
11681433 |
T |
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| Q |
114 |
gcctaaactgctaaaacatcaaagacaaacagtgaaaaccccagcaaaaccagcacaaaccgcagcatctcagcaaaaggtccatgcacccttcagagac |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11681432 |
gcctaaactgctaaaacatcaaagacaaacagtcaaaaacccagcaaaactagcacaaaccgcagcatcacagcaaaaggtccatgcacccttcagagac |
11681333 |
T |
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| Q |
214 |
agctgaaccaaaacacaaagctacgact |
241 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11681332 |
agctgaaccaaaacacaaagctacgact |
11681305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 11681253 - 11681150
Alignment:
| Q |
252 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11681253 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
11681154 |
T |
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| Q |
352 |
tatc |
355 |
Q |
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|||| |
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| T |
11681153 |
tatc |
11681150 |
T |
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