View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17330_low_22 (Length: 329)

Name: NF17330_low_22
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17330_low_22
NF17330_low_22
[»] chr1 (12 HSPs)
chr1 (25-329)||(42483769-42484074)
chr1 (42-102)||(8444908-8444968)
chr1 (28-100)||(32544941-32545013)
chr1 (48-100)||(31827138-31827190)
chr1 (36-103)||(7789694-7789761)
chr1 (28-103)||(33603511-33603586)
chr1 (48-122)||(5041045-5041121)
chr1 (186-226)||(35266173-35266213)
chr1 (28-103)||(32913841-32913916)
chr1 (183-226)||(42400865-42400908)
chr1 (81-130)||(4659039-4659090)
chr1 (36-100)||(5114086-5114150)
[»] chr4 (9 HSPs)
chr4 (28-106)||(32212755-32212833)
chr4 (43-99)||(41248328-41248384)
chr4 (182-226)||(2062228-2062272)
chr4 (183-226)||(6078132-6078175)
chr4 (182-221)||(40946444-40946483)
chr4 (180-226)||(38298402-38298448)
chr4 (36-100)||(1586435-1586499)
chr4 (31-103)||(6077979-6078050)
chr4 (173-221)||(25479575-25479623)
[»] chr6 (4 HSPs)
chr6 (43-138)||(33099582-33099680)
chr6 (36-123)||(31632394-31632483)
chr6 (174-226)||(33099717-33099769)
chr6 (183-226)||(31632542-31632585)
[»] chr3 (4 HSPs)
chr3 (48-149)||(377033-377137)
chr3 (36-123)||(7885917-7886006)
chr3 (78-123)||(24744519-24744566)
chr3 (186-226)||(45707495-45707535)
[»] chr7 (9 HSPs)
chr7 (36-102)||(9486888-9486954)
chr7 (36-102)||(33174128-33174194)
chr7 (42-139)||(34975615-34975713)
chr7 (36-102)||(42710560-42710626)
chr7 (182-226)||(33180894-33180938)
chr7 (173-221)||(33816120-33816168)
chr7 (36-102)||(25795896-25795962)
chr7 (85-125)||(46209118-46209159)
chr7 (173-221)||(33174267-33174315)
[»] chr5 (2 HSPs)
chr5 (36-106)||(36974207-36974277)
chr5 (36-103)||(38037347-38037414)
[»] chr2 (4 HSPs)
chr2 (36-106)||(45154286-45154356)
chr2 (48-106)||(37847917-37847975)
chr2 (182-226)||(16118118-16118162)
chr2 (36-102)||(39445837-39445903)
[»] chr8 (1 HSPs)
chr8 (28-100)||(1421913-1421985)
[»] scaffold0092 (1 HSPs)
scaffold0092 (30-93)||(4884-4947)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 42483769 - 42484074
Alignment:
Q  25 aactgggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtgggatccatttaagaatga 124  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  42483769 aactgggtcccaccaataactcattatcatttacatttcaacaaaaacaataatacaatgattattttaataaaaagttgtgggatccatttaagaatga 42483868  T
Q  125 gagtctaagtgagacttcgggtcttggaagatccnnnnnnnnnnnn-tcccaatgaaaatacctattaagtaccggatcttaaatgatgaagacctcatc 223  Q
      |||||||||| |||| || |||||||||||               | ||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  42483869 aggtctaagtgaaactttggatcttggaagataaaaaaaaaaaaaaattccaatgaaaatacctattaaacaccggatcttaaataatgaagacctcatc 42483968  T
Q  224 atttaaaatagtcttagataccttcggtaatggtcataaataagaatttgggtgatcgaaggaaccaagaaagtgatgcaagttgtaattatgtgaatat 323  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  42483969 atttaaaatagtcttacataccttcggcaatggtcataaataagaatttgggtgctcgaaggaaccaagaaagtgatgcaatttgtaattatgtgaatat 42484068  T
Q  324 tattct 329  Q
    ||||||    
T  42484069 tattct 42484074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 8444968 - 8444908
Alignment:
Q  42 aactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt 102  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  8444968 aactctttattatttacatttcaacaaaaacaatactacgatgattattttaataaaaagt 8444908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 32545013 - 32544941
Alignment:
Q  28 tgggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaa 100  Q
    |||||||||| || ||||| |||| ||||||||||||| |||| ||| | |||||||||||||||||||||||    
T  32545013 tgggtcctactaataactctttattatttacatttcaataaaagcaacattacaatgattattttaataaaaa 32544941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 31827190 - 31827138
Alignment:
Q  48 ttatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaa 100  Q
    ||||||||||||||||||||||  ||| |||| ||||||||||||||||||||    
T  31827190 ttatcatttacatttcaacaaatgcaacagtataatgattattttaataaaaa 31827138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 7789761 - 7789694
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtg 103  Q
    ||||| ||||| ||||||||||||||||||||||| |||    ||||||||||||||| |||||||||    
T  7789761 accaataactctttatcatttacatttcaacaaaagcaactcaacaatgattattttattaaaaagtg 7789694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 33603511 - 33603586
Alignment:
Q  28 tgggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtg 103  Q
    |||||| |||||| ||||| |||||||||||||||||||||||  ||    ||||||||||||||| |||||||||    
T  33603511 tgggtcataccaataactctttatcatttacatttcaacaaaagtaaccaaacaatgattattttattaaaaagtg 33603586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 5041045 - 5041121
Alignment:
Q  48 ttatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtg--gtgggatccatttaagaat 122  Q
    |||||||||| ||||||||||||||||    ||||||||||||||| |||||||||  ||||||||||  |||||||    
T  5041045 ttatcatttatatttcaacaaaaacaactcaacaatgattattttattaaaaagtggagtgggatccacgtaagaat 5041121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 35266173 - 35266213
Alignment:
Q  186 ctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  35266173 ctattaagtaccagatcttaaatgatgaagaccttatcatt 35266213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 32913916 - 32913841
Alignment:
Q  28 tgggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtg 103  Q
    ||||||| || || ||||| ||||||||||||||||||||||| |||    ||| ||||||||||| |||||||||    
T  32913916 tgggtcccactaataactctttatcatttacatttcaacaaaagcaactcaacagtgattattttattaaaaagtg 32913841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 42400908 - 42400865
Alignment:
Q  183 tacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||    
T  42400908 tacctattaggtaccgggtcttaaatgatgaagacctcaccatt 42400865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 4659039 - 4659090
Alignment:
Q  81 aatgattattttaataaaaagtgg--tgggatccatttaagaatgagagtct 130  Q
    |||||||||||||||||||||  |  ||||||||| ||||||||||||||||    
T  4659039 aatgattattttaataaaaagcagcgtgggatccacttaagaatgagagtct 4659090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 5114086 - 5114150
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaa 100  Q
    ||||| ||||| | |||||||||||||||||||||||||    ||||| ||||||||| ||||||    
T  5114086 accaataactcttcatcatttacatttcaacaaaaacaactcaacaataattattttattaaaaa 5114150  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 32212755 - 32212833
Alignment:
Q  28 tgggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtg 106  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||| |||| | | ||||||||||||| ||||||||||||    
T  32212755 tgggtcccaccaataactctttatcatttacatttcaacaaaagcaattgaaaaatgattattttattaaaaagtggtg 32212833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 41248384 - 41248328
Alignment:
Q  43 actcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaa 99  Q
    |||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  41248384 actctttatcatttacatttcaacaaaagcaaaaatacaatgattattttaataaaa 41248328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 2062272 - 2062228
Alignment:
Q  182 atacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  2062272 atacctattaagtaccagatcttaaatggtgaagacctcaccatt 2062228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 6078132 - 6078175
Alignment:
Q  183 tacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||    
T  6078132 tacctattaggtaccgggtcttaaatgatgaagatctcatcatt 6078175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 40946444 - 40946483
Alignment:
Q  182 atacctattaagtaccggatcttaaatgatgaagacctca 221  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  40946444 atacctattaggtaccggatcttaaatggtgaagacctca 40946483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 38298448 - 38298402
Alignment:
Q  180 aaatacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||||||||||||||  ||||||||||| ||||||||||| ||||    
T  38298448 aaatacctattaagtactagatcttaaatggtgaagacctcaccatt 38298402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 1586499 - 1586435
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaa 100  Q
    ||||| ||||| |||||||||||||||||| ||||  |||   ||||||||||||||| ||||||    
T  1586499 accaataactctttatcatttacatttcaataaaagtaattaaacaatgattattttattaaaaa 1586435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 6077979 - 6078050
Alignment:
Q  31 gtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtg 103  Q
    |||| ||||| ||||| || |||||||| |||||||||||||||    ||||||||||||||| |||||||||    
T  6077979 gtcccaccaataactctttgtcatttac-tttcaacaaaaacaactcaacaatgattattttattaaaaagtg 6078050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 25479623 - 25479575
Alignment:
Q  173 ccaatgaaaatacctattaagtaccggatcttaaatgatgaagacctca 221  Q
    |||||||| |||||||||| |||||  |||||||||| |||||||||||    
T  25479623 ccaatgaagatacctattaggtaccaaatcttaaatggtgaagacctca 25479575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 33099582 - 33099680
Alignment:
Q  43 actcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtgg--tgggatccatttaagaatgagagtc-taagtgaga 138  Q
    |||| |||||||||||||||||||||||||||    |||||||||||||||||||||| |||  |||| |||| ||||||||||| ||| |||||||||    
T  33099582 actctttatcatttacatttcaacaaaaacaactcaacaatgattattttaataaaaaatggcatggggtccacttaagaatgagtgtcttaagtgaga 33099680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 31632394 - 31632483
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt--ggtgggatccatttaagaatg 123  Q
    ||||| ||||| ||||||||||||||||||||||| ||||   | ||||||||||||| |||||| |   |||||||||| |||||||||    
T  31632394 accaataactctttatcatttacatttcaacaaaagcaattcaataatgattattttattaaaaaattgtgtgggatccacttaagaatg 31632483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 33099717 - 33099769
Alignment:
Q  174 caatgaaaatacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    ||||| || ||||||||||||| ||||||||||||| ||||||||||| ||||    
T  33099717 caatggaagtacctattaagtatcggatcttaaatggtgaagacctcaccatt 33099769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 31632542 - 31632585
Alignment:
Q  183 tacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||||||||||| || ||||||||||||||||||||| ||||    
T  31632542 tacctattaagtactgggtcttaaatgatgaagacctcaccatt 31632585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 377137 - 377033
Alignment:
Q  48 ttatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtggga--tccatttaagaatgagagtc-taagtgagacttcgg 144  Q
    ||||||||||| ||||||||||| ||||   ||||| ||||||||| |||||||||||| ||  |||| ||||||||||||||| |||||||||| | ||    
T  377137 ttatcatttacgtttcaacaaaagcaattcaacaatcattattttattaaaaagtggtgtgaggtccacttaagaatgagagtcttaagtgagaccttgg 377038  T
Q  145 gtctt 149  Q
    |||||    
T  377037 gtctt 377033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 7886006 - 7885917
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt--ggtgggatccatttaagaatg 123  Q
    ||||| ||||| |||||||||| |||||||||||| |||    ||||| ||||||||| ||||||||   |||||||||| |||||||||    
T  7886006 accaataactctttatcatttatatttcaacaaaagcaactcaacaattattattttattaaaaagttgtgtgggatccacttaagaatg 7885917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 24744519 - 24744566
Alignment:
Q  78 tacaatgattattttaataaaaagt--ggtgggatccatttaagaatg 123  Q
    |||||||||||||||||||||||||   |||||||||| |||||||||    
T  24744519 tacaatgattattttaataaaaagtagtgtgggatccacttaagaatg 24744566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 45707535 - 45707495
Alignment:
Q  186 ctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  45707535 ctattaggtaccggatcttaaatggtgaagacctcaccatt 45707495  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 9486888 - 9486954
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt 102  Q
    ||||| ||||| ||||||||||||||| ||||||||||  | |||||||||||||||||||| ||||    
T  9486888 accaataactctttatcatttacattttaacaaaaacatcaatacaatgattattttaataataagt 9486954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 33174128 - 33174194
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt 102  Q
    ||||| ||||| ||||||| ||||||||||||||| ||| | ||||||||||||||||| |||||||    
T  33174128 accaataactctttatcatatacatttcaacaaaagcaacaatacaatgattattttaagaaaaagt 33174194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 34975615 - 34975713
Alignment:
Q  42 aactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtgggatccatttaagaatgagagtc-taagtgagac 139  Q
    ||||| |||||||| | |||||||||||| ||||   |||||||| |||||  |||||||||||| |||||| ||||||||||| ||| ||||||||||    
T  34975615 aactctttatcattaatatttcaacaaaagcaattcaacaatgatgatttttttaaaaagtggtgagatccacttaagaatgagggtcttaagtgagac 34975713  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 42710560 - 42710626
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt 102  Q
    ||||| ||||| |||||||||||||||||||||||  |||   ||||||||||||||| ||||||||    
T  42710560 accaataactctttatcatttacatttcaacaaaagtaattcaacaatgattattttattaaaaagt 42710626  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 33180894 - 33180938
Alignment:
Q  182 atacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||    
T  33180894 atacctattatgtaccggatcttaaatgatgaagatctcaccatt 33180938  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 33816120 - 33816168
Alignment:
Q  173 ccaatgaaaatacctattaagtaccggatcttaaatgatgaagacctca 221  Q
    ||||| || |||||||||| || ||||||||||||||||||||||||||    
T  33816120 ccaataaagatacctattaggtgccggatcttaaatgatgaagacctca 33816168  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 25795896 - 25795962
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt 102  Q
    ||||| ||||| |||||||||||||||||||||||| ||    ||||||||||||||| || |||||    
T  25795896 accaataactctttatcatttacatttcaacaaaaataactaaacaatgattattttattagaaagt 25795962  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 46209118 - 46209159
Alignment:
Q  85 attattttaataaaaagtggtg-ggatccatttaagaatgag 125  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  46209118 attattttaataaaaagtgatgtggatccatttaagaatgag 46209159  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 33174267 - 33174315
Alignment:
Q  173 ccaatgaaaatacctattaagtaccggatcttaaatgatgaagacctca 221  Q
    |||||||| ||||||||||| || || |||||||||| |||||||||||    
T  33174267 ccaatgaagatacctattaaatagcgtatcttaaatggtgaagacctca 33174315  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 36974207 - 36974277
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtg 106  Q
    ||||| ||||| ||||||||||||||||||||||| |||    ||||| ||||||||||||||||||||||    
T  36974207 accaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtg 36974277  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 38037414 - 38037347
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtg 103  Q
    ||||| ||||| ||||||||||||||| || |||| ||| |  ||||||||||||||| |||||||||    
T  38037414 accaataactctttatcatttacattttaataaaagcaacataacaatgattattttattaaaaagtg 38037347  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 45154356 - 45154286
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtg 106  Q
    ||||| ||||| |||| |||||||||||||||||||||||   ||||| ||||||||| ||||||||||||    
T  45154356 accaataactctttattatttacatttcaacaaaaacaattcaacaataattattttattaaaaagtggtg 45154286  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 37847975 - 37847917
Alignment:
Q  48 ttatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagtggtg 106  Q
    ||||||||||||||| |||||||||||    || |||||||||||||||||||||||||    
T  37847975 ttatcatttacattttaacaaaaacaactcaacgatgattattttaataaaaagtggtg 37847917  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 16118118 - 16118162
Alignment:
Q  182 atacctattaagtaccggatcttaaatgatgaagacctcatcatt 226  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||    
T  16118118 atacctattatgtaccggatcttaaatggtgaagacctcaccatt 16118162  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 39445903 - 39445837
Alignment:
Q  36 accaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaagt 102  Q
    ||||| ||||| |||| ||||||||||||||||||| ||    ||||||||||||||| ||||||||    
T  39445903 accaataactctttattatttacatttcaacaaaaataactaaacaatgattattttattaaaaagt 39445837  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 1421913 - 1421985
Alignment:
Q  28 tgggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattattttaataaaaa 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||    |||||||||| |||| ||||||    
T  1421913 tgggtcctaccaataactctttatcatttacatttcaacaaaagcaactcaacaatgattaatttattaaaaa 1421985  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 4884 - 4947
Alignment:
Q  30 ggtcctaccaaaaactcattatcatttacatttcaacaaaaacaatagtacaatgattatttta 93  Q
    ||||| ||||| ||||| |||||||||||| ||||||||||||||    |||||||||||||||    
T  4884 ggtcccaccaataactctttatcatttacaattcaacaaaaacaactcaacaatgattatttta 4947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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