View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17330_low_23 (Length: 324)
Name: NF17330_low_23
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 45279909 - 45280236
Alignment:
| Q |
1 |
gcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagactgaaattgaaaataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45279909 |
gcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagactgaaattgaaaataga |
45280008 |
T |
|
| Q |
101 |
tatataagtattcttgtacataaatttatgtttgcaacaa--------------------aacaaaggttaa----ttaacagtaagagtaaaagttcat |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45280009 |
tatataagtattcttgtacataaatttatgtttgcaacaaaacaattcgcattaacataaaacaaaggttaattaattaacagtaagagtaaaagttcat |
45280108 |
T |
|
| Q |
177 |
actgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcatattcaagattccaaga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45280109 |
actgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcatattcaagattccaaga |
45280208 |
T |
|
| Q |
277 |
acataagactctgctacttctattatca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45280209 |
acataagactctgctacttctattatca |
45280236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University