View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_24 (Length: 320)
Name: NF17330_low_24
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 33742222 - 33742082
Alignment:
| Q |
11 |
agaatatgaataagattagagggataattgaaatggggaatgtatggtatctaagtcatagtccgatgggatgggatggtcttttaatttagtccaaggt |
110 |
Q |
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| T |
33742222 |
agaatatgaataagattagagggacaattgaaatggggaatgtatggtatctaagtcataatccgatgggatgggatggtcttttaatttagtccaaggt |
33742123 |
T |
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| Q |
111 |
cgttcaaatattcagactataccatgttgttaatcaaattt |
151 |
Q |
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| T |
33742122 |
cgttcaaatattcagactataccatgttgttaatcaaattt |
33742082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 33742045 - 33741916
Alignment:
| Q |
174 |
agaaaaacttagatgtacggtttcaacggaaattaaacattgtggaaaatcactaccaactcaaatgaaaaaagtttattacaactattagnnnnnnnct |
273 |
Q |
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| T |
33742045 |
agaaaagcttagatgtacggtttcaacggaaattaaacattgtggaaaatcactaccaactcaaatgaaaaaagtttattacaactattagtttttt--t |
33741948 |
T |
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| Q |
274 |
ttatacaaatattacaactattagttaattgt |
305 |
Q |
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| T |
33741947 |
ttttacaaatattacaactattagttaattgt |
33741916 |
T |
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