View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17330_low_26 (Length: 269)

Name: NF17330_low_26
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17330_low_26
NF17330_low_26
[»] chr6 (6 HSPs)
chr6 (58-252)||(6679276-6679470)
chr6 (126-252)||(6774816-6774935)
chr6 (143-249)||(6668365-6668471)
chr6 (143-249)||(6780044-6780150)
chr6 (1-42)||(6766091-6766132)
chr6 (1-42)||(6775043-6775084)
[»] chr5 (5 HSPs)
chr5 (58-249)||(6162683-6162874)
chr5 (77-249)||(36848292-36848464)
chr5 (69-167)||(36859750-36859848)
chr5 (189-249)||(6163424-6163484)
chr5 (201-249)||(36859700-36859748)
[»] chr3 (2 HSPs)
chr3 (58-249)||(49881263-49881454)
chr3 (65-249)||(46521667-46521851)
[»] chr1 (1 HSPs)
chr1 (111-252)||(18135288-18135429)
[»] scaffold0299 (1 HSPs)
scaffold0299 (1-42)||(13209-13250)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 58 - 252
Target Start/End: Original strand, 6679276 - 6679470
Alignment:
Q  58 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679276 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 6679375  T
Q  158 ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgt 252  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679376 ctgttgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgt 6679470  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 6774935 - 6774816
Alignment:
Q  126 agcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctact 225  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||    
T  6774935 agcgaaaagtctcttaattagagaattgctatctgtcgacaaacaattgaaagtgaat-------ttctggacatcatcccagaggaaaattaccctact 6774843  T
Q  226 gaattctcttatagatcaagagtatgt 252  Q
    |||||||||||||||||||||||||||    
T  6774842 gaattctcttatagatcaagagtatgt 6774816  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 6668365 - 6668471
Alignment:
Q  143 ttagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatc 242  Q
    ||||||||||| ||||||| ||||||||| ||| |||||| || ||||||| ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  6668365 ttagagaagtgatatctgttgacaaacaactgacagtgaagaagcagtttcaggacatcactccagaggagaattaccctgctgaattctcttatagatc 6668464  T
Q  243 aagagta 249  Q
    |||||||    
T  6668465 aagagta 6668471  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 6780150 - 6780044
Alignment:
Q  143 ttagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatc 242  Q
    ||||| ||||| ||||||| ||||||||| ||| |||||| || || |||| ||||||||| |||||||||||||||||| |||||||||||||||||||    
T  6780150 ttagaaaagtgatatctgttgacaaacaactgacagtgaagaagcaatttcgggacatcattccagaggagaattaccctgctgaattctcttatagatc 6780051  T
Q  243 aagagta 249  Q
    |||||||    
T  6780050 aagagta 6780044  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6766132 - 6766091
Alignment:
Q  1 aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt 42  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  6766132 aagtaacatgtatgttgtatgtgtgtgtagctaggtcatttt 6766091  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6775084 - 6775043
Alignment:
Q  1 aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt 42  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  6775084 aagtaatatgtatgttctatgtgtgtgtagctaggtcatttt 6775043  T

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Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 58 - 249
Target Start/End: Complemental strand, 6162874 - 6162683
Alignment:
Q  58 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 157  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  6162874 tattgatttgaaaattctagattatttacttatgtgtcttgaattactgcaaaattgcaggttttagcagcagaaagtctttcaattagagaagtgccat 6162775  T
Q  158 ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    || ||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  6162774 ctatcgacaagcaattgaaagtgaataagcagtttctggacatcatcccataagagaattaccctgctgaattctcttatagatcaagagta 6162683  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 36848464 - 36848292
Alignment:
Q  77 gattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaa 176  Q
    ||||||||||||  ||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||    
T  36848464 gattatttacttgcgtggcttgaattactgcaaaattgcaggttttagcagcagaaaatctttcaattagagaagttctatctgtcgacaagcaattgaa 36848365  T
Q  177 agtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36848364 agtgaataagcagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 36848292  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 36859848 - 36859750
Alignment:
Q  69 aaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaa 167  Q
    |||||||||||| ||||| |||||| | |||||  ||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||    
T  36859848 aaattctagattctttacatatgtggcatgaattgctgcaaaattgcaggttttagcagaagaaaatctttcaattagagaaatgctatctgtcgacaa 36859750  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 6163484 - 6163424
Alignment:
Q  189 gtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    |||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||    
T  6163484 gtttctggacattattccagatgagaattaccctgctgaattctcttatagatcaagagta 6163424  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 36859748 - 36859700
Alignment:
Q  201 catcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  36859748 catcccggaggagaattaccctactgaattatcttatagatcaagagta 36859700  T

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Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 49881263 - 49881454
Alignment:
Q  58 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 157  Q
    |||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||| ||||||||||| |||||||||||| |||    
T  49881263 tattgatttgaaaattctagattatttacgtatgtgccttgaattactgcaaaattgtaggtttcagcagcagaaagtctttctattagagaagtgttat 49881362  T
Q  158 ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||    
T  49881363 ctgtcgacaaacaattgaaagtgaataagctgtttctggacatcattccagaggaaaattaccctgccgaattctcttatagatcaagagta 49881454  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 65 - 249
Target Start/End: Original strand, 46521667 - 46521851
Alignment:
Q  65 ttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcga 164  Q
    |||||||||||| ||||||||||||||| || | ||| | |||||||||| ||||| |||| ||  || ||||||| |||||||||||| |||| |||||    
T  46521667 ttggaaattctatattatttacttatgtaccatcaattattgcaaaattgtaggttatagctgcaaaaggtctttctattagagaagtgttatccgtcga 46521766  T
Q  165 caaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  46521767 caaacaattgaaagtgaataagcagtttctggatatcattccagaggagaattaccctgctgaattctcttatagatcaagagta 46521851  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 18135288 - 18135429
Alignment:
Q  111 attgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagag 210  Q
    |||| ||||||||||||| |||| |||||   ||||||||||  ||| ||| ||||| ||||||||||||| |||  |||||||||||||||||||  ||    
T  18135288 attgtaggttttagcagcagaaaatctttatgttagagaagttgtatttgttgacaagcaattgaaagtgattaagaagtttctggacatcatccctcag 18135387  T
Q  211 gagaattaccctactgaattctcttatagatcaagagtatgt 252  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  18135388 gagaattaccctgctgaattctcttatagagcaagagtatgt 18135429  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13209 - 13250
Alignment:
Q  1 aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt 42  Q
    |||||| |||| ||||||||||| ||||||||||||||||||    
T  13209 aagtaacatgtgtgttgtatgtgtgtgtagctaggtcatttt 13250  T

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