View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_3 (Length: 689)
Name: NF17330_low_3
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Complemental strand, 41785432 - 41784744
Alignment:
| Q |
1 |
tttctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtc |
100 |
Q |
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| T |
41785432 |
tttctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtc |
41785333 |
T |
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| Q |
101 |
aattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatat |
200 |
Q |
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| T |
41785332 |
aatggttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatat |
41785233 |
T |
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| Q |
201 |
tccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagcca |
300 |
Q |
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| T |
41785232 |
tccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagcca |
41785133 |
T |
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| Q |
301 |
tgatctccattgaagctccattttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctctttgtatcattgctgctttcagttcatggtt |
400 |
Q |
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| T |
41785132 |
taatctcaattgaagctccattttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctctttgtatcattgctgctttcagttcatggtt |
41785033 |
T |
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| Q |
401 |
tctatcctgcagggccttattttcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaactcatttctctgattgatttgagtt |
500 |
Q |
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| T |
41785032 |
tctatcctgcagggccttattttcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaactcatttctctgattgatttgagtt |
41784933 |
T |
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| Q |
501 |
tccaattcgagttccatgttctttaatctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaactcctcttgca |
600 |
Q |
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| T |
41784932 |
tccaattcgagttccatgttctttaacctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaactcctcttgca |
41784833 |
T |
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| Q |
601 |
actcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcatagta |
689 |
Q |
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| T |
41784832 |
actcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcatagta |
41784744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 461 - 589
Target Start/End: Complemental strand, 41784846 - 41784718
Alignment:
| Q |
461 |
taactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaatctcgcaagaaaaccttctttctcttccatcata |
560 |
Q |
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||||| ||||| ||||||| || |||| ||| |||| |||||||||| || |||||| | |||||| | |||||||||||| |||||||||||||||||| |
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| T |
41784846 |
taactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcata |
41784747 |
T |
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| Q |
561 |
gtttgttcagtagatctcatttcagctaa |
589 |
Q |
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| T |
41784746 |
gtatgttcggttgatttcatttcggctaa |
41784718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 10834648 - 10834316
Alignment:
| Q |
4 |
ctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaat |
103 |
Q |
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||||||||||||||||||||||||||| | || | |||||||| | | ||||| || ||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
10834648 |
ctgccaattcttccattttcctttctgccagtcaccgattcaacctgaacttatttgacatgattatggtttgtttttggtccacatttatttggtcaat |
10834549 |
T |
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| Q |
104 |
tgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattcc |
203 |
Q |
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|||| || |||||| |||||||| ||||| |||||||||||||| || ||||||||| | ||| |||| | |||||| | |||||| ||||| | | |
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| T |
10834548 |
ggttggtgcttgatccattatagttatctct-gatcagctatctgggttgcaaactttgtggttaaattttccacctttgccaggctttcagcatactgc |
10834450 |
T |
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| Q |
204 |
ttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccatga |
303 |
Q |
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| T |
10834449 |
ttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagttatcgaaatctagtcccatgtcattaacttcagcttttaaagccatga |
10834351 |
T |
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| Q |
304 |
tctccattgaagctccattttcatcgctatcgttt |
338 |
Q |
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||||||| |||||||||||||| |||||||||||| |
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| T |
10834350 |
tctccatcgaagctccattttcgtcgctatcgttt |
10834316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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