View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_30 (Length: 250)
Name: NF17330_low_30
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_30 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 42956803 - 42957029
Alignment:
| Q |
3 |
tcccaaataagaatagactcctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaactac |
102 |
Q |
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| T |
42956803 |
tcccaaataagaatagactcatagagtctctaaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaactac |
42956902 |
T |
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| Q |
103 |
tgtgtcagggttgggtccatccacaagactgagatgtaccgcgaattggaagttttgttctttgcatacaactctattcatttaaagcatcctttcccac |
202 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42956903 |
tgtgtcagggttgggtccatccacaagac--agatgtaccgcgaattggaagttttgttctttgcatacaactctattcatttaaagcatcctttctcac |
42957000 |
T |
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| Q |
203 |
gtggtattcattgctagagaggtgtcgat |
231 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
42957001 |
gtggcattcattgctagagaggtgtcgat |
42957029 |
T |
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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 7386121 - 7386026
Alignment:
| Q |
3 |
tcccaaataagaatagactcctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaa |
98 |
Q |
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| T |
7386121 |
tcccaaataaaaattgacccattgagtctctaaaacacataccataacccatgagtgaattgttgttaaacaaggcacgatcaacattacatttaa |
7386026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 49508297 - 49508224
Alignment:
| Q |
26 |
gagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaac |
99 |
Q |
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| T |
49508297 |
gagtctctgaagcataaaccatagcccatgatagagttattgttaaacaacgcgcagtcaacattacatttaac |
49508224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 5173271 - 5173177
Alignment:
| Q |
3 |
tcccaaataagaatagactcctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatattta |
97 |
Q |
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|||||||||| ||| ||| | | || ||||| || || ||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||| |
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| T |
5173271 |
tcccaaataaaaattgacccattgaatctctaaaacatataccataacccatgaatgaattgttgttaaacaaggcacagtcaacattacattta |
5173177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 237015 - 237088
Alignment:
| Q |
26 |
gagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaac |
99 |
Q |
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| T |
237015 |
gagtctctgaagcataaaccatagcccatgatagagttattgttaaacaacgcgcagtcaacattacatttaac |
237088 |
T |
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