View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17330_low_37 (Length: 232)
Name: NF17330_low_37
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 35554795 - 35554945
Alignment:
| Q |
68 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattctgtaagttcttcaagaccttttgtaacaatgaaaatggtaaga |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35554795 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattctgtaagttcttcaagaccttttgtaacaatgaaaatggtaaga |
35554894 |
T |
|
| Q |
168 |
gaccctgctttgcaggtcaaacgcaaaatctatttttcatgggaaagtagt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35554895 |
gaccctgctttgcaggtcaaacgcaaaatctatttttcatgggaaagtagt |
35554945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 35552589 - 35552643
Alignment:
| Q |
15 |
cacagagagagtgacacagcttccccctcataaaagagcaagtgggtttttaaaa |
69 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35552589 |
cacatagagagtgacacagcttccccctcataaaagagcaagtgggtttttaaaa |
35552643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 35889472 - 35889405
Alignment:
| Q |
68 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattctgtaagttctt |
135 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||| ||||||| |||| |||||||| ||||||||| |
|
|
| T |
35889472 |
aactaccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaagttctt |
35889405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University