View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_42 (Length: 212)
Name: NF17330_low_42
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 47916958 - 47917134
Alignment:
| Q |
16 |
cacagaacttgatcaagtggctgtggataatggagcgccacttcctcaatcaaatggggggtctaaaatggagaggagagtgtccttgaagtcgacaaag |
115 |
Q |
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| T |
47916958 |
cacagaacttgatcaagtggctgtggataatggagcgccacttcctcaatcaaatggggggtctaaaatggaga-gagagtgtccttgaagtcgagaaag |
47917056 |
T |
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| Q |
116 |
tatgcctcgatgagaagtcaaactggagactttgatcacaataatcaatggttgtttgaaacaaaggggacatatggtttt |
196 |
Q |
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| T |
47917057 |
tatgcctcgatgagaagtcaaactggagactttgatcac---aatcgatggttgtttgaaacaaaggggacatatggtttt |
47917134 |
T |
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Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 29920326 - 29920142
Alignment:
| Q |
16 |
cacagaacttgatcaagtggctgtggataatggagcgccacttcc------tcaatcaaatggggggtctaaaatggagaggagagtgtccttga---ag |
106 |
Q |
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|||||| |||||| ||||||||||| ||||||||| ||||||||| || | ||||||||||||||||||||||||||||| ||||||||| || |
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| T |
29920326 |
cacagagcttgatgaagtggctgtgaataatggagggccacttccacttcctccaccaaatggggggtctaaaatggagaggagattgtccttgatgaag |
29920227 |
T |
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| Q |
107 |
tcgacaaagtatgcctcgatgagaagtcaaactggagactttgatcacaataatcaatggttgtttgaaacaaaggggacatatggtt |
194 |
Q |
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| T |
29920226 |
tcgacaaagtctgcgctgatgagaagtcaaactggagactttgatcac---aatcgatggttgtttgaaacaaaggggacatatggtt |
29920142 |
T |
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