View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_6 (Length: 531)
Name: NF17330_low_6
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 32494900 - 32494408
Alignment:
| Q |
20 |
agaagagagtaagaagaatatattcaccataaaaaatataaacacgcaagcaatttcatgacttcgagctcaagatggaatgttcaatttacaatttatt |
119 |
Q |
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| T |
32494900 |
agaagagagtaagaagaatatattcaccataaaaaatataaacacgcaagcaatttcatgacttcgagttcaagatggaatgttcaatttacaatttatt |
32494801 |
T |
|
| Q |
120 |
gatcactatgaaatagctacatagatcaccacaaatacaataaaatgaattgatagtaaataattctataaacatcgtacaattgtagaaacaggaacga |
219 |
Q |
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| T |
32494800 |
gatcactatgaaatagctacatagatcaccacaaatacaataaaatgaattgatagtaaataattctataaacaccgtacaattgtagaaacaggaacga |
32494701 |
T |
|
| Q |
220 |
aaatgtattaaagaatttgcaatttaatgatgaaagagactacatggcaccatcaatagcaattggcaaacgaatgatgcattctgatgaagaaaaaatt |
319 |
Q |
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| T |
32494700 |
aaatgtattaaagaatttgcaatttaatgatgaaagagactacatggcaccatcaatagcaattggcaaacgaatgatgcattctgatgaagaaaaaaat |
32494601 |
T |
|
| Q |
320 |
ttgcaaaatcaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagt |
419 |
Q |
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| T |
32494600 |
ttgcaaaatcaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagt |
32494501 |
T |
|
| Q |
420 |
ctgacttaaaagtagtaggatttttgctgtagtcagaaacgatagaatctgtagatcctcctccaccgaataaaacttgatctgattgaagaa |
512 |
Q |
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| T |
32494500 |
ctgacttaaaagtagtaggatttttgctgtattcagaaacgatagaatctgtagatcctcctccaccaaataaaacttgatctgattgaagaa |
32494408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 108 - 512
Target Start/End: Complemental strand, 28596580 - 28596188
Alignment:
| Q |
108 |
ttacaatttattgatcactatgaaatagctacatagatcaccacaaatacaataaaatgaattgatagtaaataattctataaacatcgtacaattgtag |
207 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| || |||||||| ||||||||||||| |
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| T |
28596580 |
ttacaatttattgatcactatgaaatagctaa---------cacatatacaataaaatgaattgataataaatctttatataaacaccgtacaattgtag |
28596490 |
T |
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| Q |
208 |
aaacaggaacgaaaatgtattaaagaatttgcaatttaatgatgaaagagactacatggcaccatcaatagcaattggcaaacgaatgatgcattctgat |
307 |
Q |
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| T |
28596489 |
aaaaaggaacgcaaatgtataaaagaatt---aatttaatgatgaaagagactaacagacaccattaatagcaattggcaaacaaatgatgcatgctgat |
28596393 |
T |
|
| Q |
308 |
gaagaaaaaattttgcaaaatcaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatag |
407 |
Q |
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| T |
28596392 |
gaagaaagaattttgtaaaattaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatag |
28596293 |
T |
|
| Q |
408 |
cagcagcaaagtctgacttaaaagtagtaggatttttgctgtagtcagaaacgatagaatctgtagatcctcctccaccgaataaaacttgatctgattg |
507 |
Q |
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|||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596292 |
cagcggcaaagtcagacttaaaagttgtaggatttttgctgtattcagaaacgatagaatctgtagatcctcctccaccgaataaaacttgatctgattg |
28596193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 332 - 512
Target Start/End: Original strand, 28591608 - 28591786
Alignment:
| Q |
332 |
ttgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagtctgacttaaaag |
431 |
Q |
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|||| ||||||||| || ||||||||||| ||||| || || || ||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
28591608 |
ttgacagcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagtcagacttaaaag |
28591707 |
T |
|
| Q |
432 |
tagtaggatttttgctgtagtcagaaacgatagaatctgtagatcctcctccaccgaat-aaaacttgatctgattgaagaa |
512 |
Q |
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| T |
28591708 |
ttgtaggattgttgctgtattcagaaacgatagaatctgtaga---tcctccactgaataaaaacttgatctgattgaagaa |
28591786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 338 - 512
Target Start/End: Original strand, 28586526 - 28586698
Alignment:
| Q |
338 |
gcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagtctgacttaaaagtagtag |
437 |
Q |
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||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| || || ||||| |||| |
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| T |
28586526 |
gcactgcatatgcttcttatgactccagccgatccggttaagggttcaatatctcccatctttatcatagcagttgcaaagtcggatttgaaagttgtag |
28586625 |
T |
|
| Q |
438 |
gatttttgctgtagtcagaaac-gatagaatctgtagatcctcctccaccgaataaaacttgatctgattgaagaa |
512 |
Q |
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|||| |||||||| || ||||| | ||||| |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
28586626 |
gattgttgctgtattctgaaacaaaaagaatttgtaga---ccctccactgaataaaacttgatctgattgaagaa |
28586698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 28596685 - 28596639
Alignment:
| Q |
64 |
cgcaagcaatttcatgacttcgagctcaagatggaatgttcaattta |
110 |
Q |
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| T |
28596685 |
cgcaagcaatttcatgacttcgtactcaagatggaatgttcaattta |
28596639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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