View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_7 (Length: 513)
Name: NF17330_low_7
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 40443975 - 40443699
Alignment:
| Q |
10 |
aagaatatggttgtgatggtggcaataatcagattttccctacagtggttgaaatgaaagagatcaatatagtttagtttgatgttgcattgtatttaat |
109 |
Q |
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| T |
40443975 |
aagaacatggttgtgatggtggcaataatcagattttccctacagtggttgaaatgaaagagatcaatatagtttagtttgatgttgcattgtatttaat |
40443876 |
T |
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| Q |
110 |
aggcttaattaatctctatctagttattatgttatattggtattaatagggactattgtcatactttgactaattatcactacagttctagttcaagttt |
209 |
Q |
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| T |
40443875 |
aggcttaattaatctctatctagttattatgttatattggtattaatagggactattgtcatactttgactaattatcactacagttctagttcaagttt |
40443776 |
T |
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| Q |
210 |
gtttctgttaatcaaacattttgtcaagtttttatgtagcaaataaatatattattctaacacattgttttatatat |
286 |
Q |
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| T |
40443775 |
gtctctgttaatcaaacattttgtcaagtttttatgtagcaaataaatatattattcgaacacattattatatatat |
40443699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 296 - 492
Target Start/End: Complemental strand, 40443672 - 40443476
Alignment:
| Q |
296 |
taccaataatgtagctgtgcatgttgaacttcaaaggattccnnnnnnnnnnnnnnnnngctaaccaactccaaagtatatataataaaacattgttatt |
395 |
Q |
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| T |
40443672 |
taccaaaaatgtagctgtgcatgttgaacttcaaaggattccaaaataaaataaaaaaagctaaccaattccaaagtatatataataaaacattgttatt |
40443573 |
T |
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| Q |
396 |
ttccaccctattctttctcgtgcatcctattaggattataaaatccgaaatttttaacgtgttttatagtgtttacgctagataattaaatggtgac |
492 |
Q |
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| T |
40443572 |
ttccaccctattctttctcatgtatcctattaggattataaaatccaaaattttgaacgtgttttatagtgtttacgctagataattaaatggtgac |
40443476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 1517821 - 1517861
Alignment:
| Q |
235 |
aagtttttatgtagcaaataaatatattattctaacacatt |
275 |
Q |
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| T |
1517821 |
aagtttttatatagcaaatatttatattattctaacacatt |
1517861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 35356462 - 35356410
Alignment:
| Q |
409 |
tttctcgtgcatcctattaggattataaaatccgaaat-ttttaacgtgtttt |
460 |
Q |
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| T |
35356462 |
tttctcgtgcgtcctatttgaattctaaaatccgaaatgttttaacgtgtttt |
35356410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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