View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_low_9 (Length: 478)
Name: NF17330_low_9
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_low_9 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 45768456 - 45768075
Alignment:
| Q |
1 |
taagaagaaataccccctttacacctacaagaagtgagtgttcatggagtttcttaggtggttactctggttaccctaattacatggcaaacactgaatc |
100 |
Q |
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| T |
45768456 |
taagaagaaataccccctttacacctacaagaagtgagtgttcatggagtttcttaggtggttactctggttaccctaattacatggcaaacactgaatc |
45768357 |
T |
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| Q |
101 |
ttctaaagctaaggttagatcacaaagtgcaccaagacaaaggcatgagtttgaggaatacagttctactagaaggccttttcaaggtctttgggatgta |
200 |
Q |
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| T |
45768356 |
ttctagagctaaggttagatcacaaagtgcaccaagacaaaggcatgagtttgaggaatacagttctactagaaggccttttcaaggtctttgggatgta |
45768257 |
T |
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| Q |
201 |
gggtctactaattcagacaatgattctgattcaaggagcaacaaagtctcacctgctttgagtcgttttaatagaattggaagtagcaatttaaggtgac |
300 |
Q |
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| T |
45768256 |
gggtctactaattcagacaatgattctgattcaaggagcaacaaagtctcacctgctttgagtcgttttaatagaattggaagtagcaatttaaggtgac |
45768157 |
T |
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| Q |
301 |
acattgcttgtcttatgcttgtgtatgaagacattttaattaccactttttccacaaaatagaaaaaagaaacatgtttcca |
382 |
Q |
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| T |
45768156 |
acattgcttgtcttatgcttgtgtatgaagacattttaattaccactttttccacaaaatagaaaaaagaaacatgtttcca |
45768075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 45768055 - 45767997
Alignment:
| Q |
401 |
ggtgtgtggcagctttttaaaatgtaattactaagtaatagtaaccttttgacctgtactttt |
463 |
Q |
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| T |
45768055 |
ggtgtgtggcagctttttaaaatgtaattac----tagtagtaacattttgacctgtactttt |
45767997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 46632696 - 46632760
Alignment:
| Q |
80 |
ttacatggcaaacactgaatcttctaaagctaaggttagatcacaaagtgcaccaagacaaaggc |
144 |
Q |
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| T |
46632696 |
ttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggc |
46632760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 39810 - 39632
Alignment:
| Q |
18 |
tttacacctacaagaagtgagtgttcatggagtttcttaggtggttactctggttaccctaattacatggcaaacactgaatcttctaaagctaaggtta |
117 |
Q |
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| T |
39810 |
tttacacctactaaaagtgagagttcatggggatttttcaatgctcactctggttatcctagttatatggcaaatactcaatcttctagggctaaggtta |
39711 |
T |
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| Q |
118 |
gatcacaaagtgcaccaagacaaaggcatgagtttgaggaatacagttctactagaaggccttttcaaggtctttggga |
196 |
Q |
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| T |
39710 |
ggtcacaaagtgctccaagacaaaggcttgagtttgagagatacggttcatctaataggtctattcaaggtctttggga |
39632 |
T |
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