View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_high_13 (Length: 277)
Name: NF17331_high_13
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 88 - 262
Target Start/End: Original strand, 609363 - 609537
Alignment:
| Q |
88 |
caaatgagagttttcaagaagttgccaatgcaagccaaagaggttcaccccaatttcccaacctttcattgttttcatgtttaccttctttgcatctcct |
187 |
Q |
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| T |
609363 |
caaatgagagttttcaagaagttgccaatgcaagccaaagaggttcaccccaatttcccaacctttcattgttttcatgtttaccttctttgcatctcct |
609462 |
T |
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| Q |
188 |
tcttctacttcccctctcatacctctccattttcacttcactctcaactttccaaccattttcttccttctctat |
262 |
Q |
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| T |
609463 |
tcttctacttcccctctcatacctctccattttcacttcactctcaactttccaaccattttcttccttctctat |
609537 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 609294 - 609361
Alignment:
| Q |
1 |
cagaagaaaaagaacagatacctaaaaattctnnnnnnnnttgttttacatgatcattgttaaataat |
68 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
609294 |
cagaagaaaaagaacagatacctaaaaattctaaaaaaaattgttttacatgatcattgttaaataat |
609361 |
T |
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