View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_high_15 (Length: 256)
Name: NF17331_high_15
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 131095 - 130853
Alignment:
| Q |
7 |
tagataattctcacctagatctctgaaaaatcatccacaagctgcatggacggccgcacatacaagggtatgtgggccttgg-cctcacaactttagg-- |
103 |
Q |
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| T |
131095 |
tagaaaattctcacctagatctctgaaaaatcatccacaagctgcatggacggccgcacatacaagggtatgtgggccttggtcctcacaactttaggaa |
130996 |
T |
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| Q |
104 |
---------aagaaaaacaatacttatatatattatggaaagaaagnnnnnnngaagaagataatgatagtgaagtttaattaagttattgagatctaca |
194 |
Q |
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| T |
130995 |
gaaaaaaaaaagaaaaacaatacttatatatattatggaaaaaaa----aaaaaaaggagataatgatagtgaagtttaattaagttattgagatctaca |
130900 |
T |
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| Q |
195 |
caaaagaattataagaaaaatctatctaattaataattggttagact |
241 |
Q |
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| T |
130899 |
caaaagaattataagaaaaatctatctaattaataattggttagact |
130853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 4711953 - 4712033
Alignment:
| Q |
58 |
ggccgcacatacaagggtatgtgggccttg-gcctcacaactttaggaagaaaaacaatacttatatatattatggaaagaaa |
139 |
Q |
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| T |
4711953 |
ggccccacatacaaaggtatgtgggccttgatcctcacta-tttaggaa-aaaaataatacctatatatattatgaaaagaaa |
4712033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 30861392 - 30861352
Alignment:
| Q |
50 |
gcatggacggccgcacatacaagggtatgtgggccttggcc |
90 |
Q |
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| T |
30861392 |
gcatgcacggccccacatccaagggtatgtgggccttggcc |
30861352 |
T |
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