View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_high_5 (Length: 394)
Name: NF17331_high_5
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 30519544 - 30519341
Alignment:
| Q |
2 |
tagtgcctattttatgcaactttttcttggttgatatggttacacacacaccaaagaaaactgctgtgaaacaaaaatctaggaagtaagataaaagatt |
101 |
Q |
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| T |
30519544 |
tagtgcctattttatgcaactttttcttggttcatatggttacacacac--caaagaaaactgctgtgaaacaaaaatctaggaagtaagataaaagatt |
30519447 |
T |
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| Q |
102 |
gaagacaccttaccaaaatagaaatagaaatagtatacaaacatatataagctgcaatgtatacatttgaaagacatatatatgtatagtgtagttcctt |
201 |
Q |
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| T |
30519446 |
gaagacaccttaccaaaatagaaatagaaatagtatacaaac----ataagctgcaatgtatacatttgaaagacatatatatgtatagtgtagttcctt |
30519351 |
T |
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| Q |
202 |
actatttagt |
211 |
Q |
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|||||||||| |
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| T |
30519350 |
actatttagt |
30519341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 30519262 - 30519174
Alignment:
| Q |
293 |
agcaagaacaaattatgggataatcattccaaatggagatcaactttcttccaacctcatcatatgtgtcatcatacacctttgcttct |
381 |
Q |
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| T |
30519262 |
agcaagaacaaattatgggataatcattccaaatggagatcaactttcttccaacctcatcatatgtgtcatcatacacctttgcttct |
30519174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 38897153 - 38897072
Alignment:
| Q |
299 |
aacaaattatgggataatcattccaaatggagatcaactttcttcc----aacctcatcatatgtgtcatcatacacctttgc |
377 |
Q |
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| T |
38897153 |
aacaaattatgagataatcattccaaatggatg-caactttcttgctatcaacctcatcatatgtgtcatcatacacctttgc |
38897072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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