View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_10 (Length: 364)
Name: NF17331_low_10
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 345
Target Start/End: Complemental strand, 32551079 - 32550717
Alignment:
| Q |
4 |
acacatcaacaggggtccatcttcaatcctcatcgtcgctctccacctcctcttcatcataaataggataagggtcatcattgtcgttcagagtcggcgc |
103 |
Q |
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| T |
32551079 |
acacatcaacaggggtccatcttcaatcctcatcgtcgctctccacctcctcttcatcataaataggataagggtcatcattgtcgtttagagtcggcgc |
32550980 |
T |
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| Q |
104 |
tcctgtgtgc--agtgggcaggctcttcaacttgcacatgctcacctgacctcccagcatgtgcttgcttaaattgggccaattgctcctcata------ |
195 |
Q |
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| T |
32550979 |
tcctgtgtgctgtgtgggcaggctcttcaacttgcacatgctcacctgaccttccagcatgtgcttgcttaaattgggccaattgctcctcatattatat |
32550880 |
T |
|
| Q |
196 |
-------------ttttcgttcaagcaatttttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctc |
282 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550879 |
atatatatgaccgttttcgttcaagcaatttttgcataagggcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctc |
32550780 |
T |
|
| Q |
283 |
gcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggtgagctt |
345 |
Q |
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| T |
32550779 |
gcgcatttcatgggtcatctcaggctggtgtgaggatccctcaccatgattcagggtgagctt |
32550717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 339
Target Start/End: Original strand, 40542707 - 40542890
Alignment:
| Q |
162 |
gtgcttgcttaaattgggccaattgctcctcatattttcgttc------aagcaatttttgcacaagagcctcctgactcgccatttgttgtatgagctg |
255 |
Q |
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| T |
40542707 |
gtgcttgcctaaactgagtcagttgctcctcatattttcgttgtcggctaagcaaatcttgcacaacggcctcgtgactcgccatttgttgtgtgagctg |
40542806 |
T |
|
| Q |
256 |
ctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggt |
339 |
Q |
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|||||| |||||| ||||||| || || | ||||||| ||||| ||||||| || |||| || ||||||||||| ||||| |
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| T |
40542807 |
ctcttgagtcaatctttgaataaggtcacacatttcagaggtcagtgcaggctgttggaaggatccttcaccatgattaagggt |
40542890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 40542574 - 40542625
Alignment:
| Q |
4 |
acacatcaacaggggtccatcttcaatcctcatcgtcgctctccacctcctc |
55 |
Q |
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| T |
40542574 |
acacatcatcaagggtccaacttcaatcttcatcgtcgctctccacctcctc |
40542625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 339
Target Start/End: Original strand, 7781711 - 7781826
Alignment:
| Q |
224 |
gcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccct |
323 |
Q |
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||||| || ||||||||||| || ||||||||||||| |||||| ||||||| || || ||||| ||| |||||| | ||||||| || ||||| || | |
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| T |
7781711 |
gcctcgtgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagcgcaggctgctgggaggatcctt |
7781810 |
T |
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| Q |
324 |
caccatgattcagggt |
339 |
Q |
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|||||||||| ||||| |
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| T |
7781811 |
caccatgattaagggt |
7781826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 339
Target Start/End: Original strand, 6659817 - 6660003
Alignment:
| Q |
159 |
catgtgcttgcttaaattgggccaattgctcctcatattttcgttc------aagcaatttttgcacaagagcctcctgactcgccatttgttgtatgag |
252 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||| |||||| |||||| | ||| |||| ||||| || ||||||||||| || |||| |
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| T |
6659817 |
catgtgcttgccgaaattgagccaattgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgag |
6659916 |
T |
|
| Q |
253 |
ctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggt |
339 |
Q |
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||||||||| |||||| ||||||| || || ||||| ||| |||||| ||||||| || ||||| || || |||||||| ||||| |
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| T |
6659917 |
ctgctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggt |
6660003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 7357275 - 7357338
Alignment:
| Q |
49 |
cctcctcttcatcataaataggataagggtcatcattgtcgttcagagtcggcgctcctgtgtg |
112 |
Q |
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||||||||||| |||| || | ||||||||| ||||||||||||||| ||||||||| |||||| |
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| T |
7357275 |
cctcctcttcaccatagatcgaataagggtcttcattgtcgttcagaatcggcgctcttgtgtg |
7357338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 7430451 - 7430576
Alignment:
| Q |
214 |
ttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgt |
313 |
Q |
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||||||||| ||| | ||||||||||| || || ||| |||||||||||||||| | ||||| ||||| ||||| || | |||| ||||||||| || |
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| T |
7430451 |
ttgcacaagggccgcttgactcgccatctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgg |
7430550 |
T |
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| Q |
314 |
gaggacccctcaccatgattcagggt |
339 |
Q |
| |
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|||| || ||||||||||| ||||| |
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| T |
7430551 |
gaggttccttcaccatgattgagggt |
7430576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 6052593 - 6052679
Alignment:
| Q |
253 |
ctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggt |
339 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||| || |||||| ||||||||| || ||| | || ||||||||||| ||||| |
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| T |
6052593 |
ctgctcttgtgtcaatctatgaataagctcccgcatctctggggtcagctcaggctgctgggagaatccttcaccatgattgagggt |
6052679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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