View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_13 (Length: 294)
Name: NF17331_low_13
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 32834832 - 32834561
Alignment:
| Q |
19 |
gtataaaaatgaattaaggaacatatatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctt |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834832 |
gtataaaaatgaattaaggaacatacatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctt |
32834733 |
T |
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| Q |
119 |
taggaatatttatttatattcacaagtacaaagataaataaatcaaagaaagaaagaa----agaagcataccagtgtaaagatttgggaaatgactagg |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32834732 |
taggaaaatttatttatattcacaagtacaaagataaataaatcaaagaaagaaagaaagaaagaagcataccagtgtaaagatttgggaaatgactagg |
32834633 |
T |
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| Q |
215 |
gcgacagtgatgccccagaggaacgtcttctctctatcttgatgcggtggatcctggttcggtttctgtgct |
286 |
Q |
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| T |
32834632 |
gcgacagtgatgccccagaggaacgtcttctctctatcttgatgcggtggatcctggttcggtttctgtgct |
32834561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 32841211 - 32840943
Alignment:
| Q |
19 |
gtataaaaatgaattaaggaacatatatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctt |
118 |
Q |
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||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
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| T |
32841211 |
gtataaaaatgaattgaggagcatatatagattgcatgcatacaataagatactaactacgcagacaaatacattcaataccaacacaattatctttctt |
32841112 |
T |
|
| Q |
119 |
taggaatatttatttatattcacaagtacaaagataaataaatcaaa-----gaaagaaagaaagaagcataccagtgtaaagatttgggaaatgactag |
213 |
Q |
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| T |
32841111 |
gaggagtctttatttatattcacacgtacaaagataaataaatcaaaagaatgaaagaaagaaagacacataccagtgtaaggatttgggaaatgactaa |
32841012 |
T |
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| Q |
214 |
ggcgacagtgatgccccagaggaacgtcttctctctatcttgatgcggtggatcctggttcggtttctg |
282 |
Q |
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| T |
32841011 |
ggcgactgtgatgcccctgaggaacgtcttctctctatcttgctgcggtggagcctggttcggtttctg |
32840943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 31661736 - 31661789
Alignment:
| Q |
19 |
gtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
72 |
Q |
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||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
31661736 |
gtataaaaatgaattgaggaacatatatagattgcatgcacatgataagatact |
31661789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 31683202 - 31683255
Alignment:
| Q |
19 |
gtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
72 |
Q |
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||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| |
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| T |
31683202 |
gtataaaaatgaattgaggaacatgtatagattgcatgcacatgataagatact |
31683255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 7479333 - 7479224
Alignment:
| Q |
22 |
taaaaatgaattaaggaacatatatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctttag |
121 |
Q |
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|||||||||||||||||||||| || |||| |||||||| ||| |||||||||||| |||| || || | |||||||||||||| || ||||| ||| |
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| T |
7479333 |
taaaaatgaattaaggaacatacatcgattgcatgcatacgat-agatactaactatgcagagaattaaaaatgataccaacaccatcatttttctgtag |
7479235 |
T |
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| Q |
122 |
gaatatttatt |
132 |
Q |
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|| ||| |||| |
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|
| T |
7479234 |
gagtatatatt |
7479224 |
T |
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