View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_18 (Length: 250)
Name: NF17331_low_18
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_18 |
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| [»] scaffold0613 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 30249696 - 30249939
Alignment:
| Q |
1 |
ccataataataaatcaaatagattttgaggatcccaatgattatggtatgatggcactattggtgatgttaaatgggtccatcgctttgatctcttgtta |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249696 |
ccataataatgaatcaaatagattttgaggatcccaatgattatggtatgatggcactattggtgatgttaaatgggtccatcgctttgatctcttgtta |
30249795 |
T |
|
| Q |
101 |
tgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249796 |
tgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatatt |
30249895 |
T |
|
| Q |
201 |
gaggaaccaattggagtagggaagaatggtgatatattcttcga |
244 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30249896 |
gaggaacctattggagtagggaagaatggtgatatattcttcga |
30249939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 25628141 - 25628269
Alignment:
| Q |
59 |
attggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatca |
158 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||| || || ||| |||||| |||||| | |||||||||||||||| |||||||||||| |
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| T |
25628141 |
attggtgatgttaaatggttccattgctttgatctcttggtatggagacacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatca |
25628240 |
T |
|
| Q |
159 |
tggactaaactcttcactattggaccttt |
187 |
Q |
| |
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|||||||||||||||| |||||||||||| |
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| T |
25628241 |
tggactaaactcttcattattggaccttt |
25628269 |
T |
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Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 29352582 - 29352379
Alignment:
| Q |
38 |
tgattatggtatgatggcactattggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggt |
137 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29352582 |
tgattatggtatggtggcacgattggtgatgttaaatgggtccatcgctttgatctcttggtatgtaggcaagactacctttgacatattaattttaggt |
29352483 |
T |
|
| Q |
138 |
gaacttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattgaggaaccaattggagtagggaagaatggtgatatat |
237 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
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| T |
29352482 |
gaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattcaggaacctattggagtagggaggaatggtgatatat |
29352383 |
T |
|
| Q |
238 |
tctt |
241 |
Q |
| |
|
|||| |
|
|
| T |
29352382 |
tctt |
29352379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 34325261 - 34325444
Alignment:
| Q |
62 |
ggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagt-gagtgaatcatg |
160 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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|
| T |
34325261 |
ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgttgagtgaatcatg |
34325360 |
T |
|
| Q |
161 |
gactaaactcttcactattggacctttgccctcctatattgaggaaccaattggagtagggaagaatggtgatatattcttcga |
244 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||| |||||| || ||||||| | ||| ||||||||||||||| ||||| |
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|
| T |
34325361 |
gactaagctcttcactattggaccttttcccttctacattgagagacttattggagcaaggaggaatggtgatatatttttcga |
34325444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 44937867 - 44937806
Alignment:
| Q |
111 |
actacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactctt |
172 |
Q |
| |
|
||||| ||| |||||| |||||| |||||||| || |||| |||||||||||||||||||| |
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|
| T |
44937867 |
actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctt |
44937806 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 4027835 - 4028035
Alignment:
| Q |
42 |
tatggtatgatggcactattggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaac |
141 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||||||| |||||||||||||| ||| | | ||||||||||||||||| ||||||||||||| |
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| T |
4027835 |
tatggtatggcggcacaatcggtggtgttaaatgggtccattgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaac |
4027934 |
T |
|
| Q |
142 |
ttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattgaggaaccaattggagtagggaagaatggtgatatattctt |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||| ||||||| ||||| |||||||||||||||||| |
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|
| T |
4027935 |
ttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctctattgagagacctattggagcagggaggaatggtgatatattctt |
4028034 |
T |
|
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
4028035 |
c |
4028035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 30651516 - 30651645
Alignment:
| Q |
59 |
attggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatca |
158 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||| || | ||| |||||| |||||| | |||||||||||||||| |||||||||||| |
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|
| T |
30651516 |
attggtgatgttaaatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatca |
30651615 |
T |
|
| Q |
159 |
tggactaaactcttcactattggacctttg |
188 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |
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|
| T |
30651616 |
tggactaaactctttattattggacctttg |
30651645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 31777862 - 31777991
Alignment:
| Q |
59 |
attggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatca |
158 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||| | || | | |||||| |||||| | |||||||||||||||| |||||||||||| |
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|
| T |
31777862 |
attggtgatgttaaatggttccattgctttgatctcttggtatgaatacacggccacctttcacatatcagttttaggtgaacttggtgtgagtgaatca |
31777961 |
T |
|
| Q |
159 |
tggactaaactcttcactattggacctttg |
188 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |
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|
| T |
31777962 |
tggactaaactctttattattggacctttg |
31777991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 42637420 - 42637352
Alignment:
| Q |
111 |
actacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactatt |
179 |
Q |
| |
|
||||| ||| |||||| |||||| |||||| | || |||| ||||||||||| ||||||||||||||| |
|
|
| T |
42637420 |
actacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttcactatt |
42637352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 48742055 - 48741982
Alignment:
| Q |
111 |
actacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactattggacc |
184 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| || |||| ||||| |||||||||||||||| | ||||||| |
|
|
| T |
48742055 |
actaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacc |
48741982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 160 - 276
Alignment:
| Q |
68 |
gttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaa |
167 |
Q |
| |
|
|||||||| || ||| || |||||||||| | ||||| | |||||| ||| |||||| |||||| |||||| ||||| || |||||||||||| || |
|
|
| T |
160 |
gttaaatgagtgcattgcattgatctcttatcatgtaccaaggactacttttcacatatcaattttgggtgaaattggaaagaatgaatcatggaccaat |
259 |
T |
|
| Q |
168 |
ctcttcactattggacc |
184 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
260 |
cacttcactattggacc |
276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 32744976 - 32744853
Alignment:
| Q |
67 |
tgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaa |
166 |
Q |
| |
|
|||||||||||||||| || |||||||| | ||||| | | |||||| ||| |||||| |||| | ||||| |||| ||| ||||||||||| || |
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|
| T |
32744976 |
tgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaagaatcatggaccaa |
32744877 |
T |
|
| Q |
167 |
actcttcactattggacctttgcc |
190 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
32744876 |
tctcttcactattggaccattgcc |
32744853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 286357 - 286325
Alignment:
| Q |
210 |
attggagtagggaagaatggtgatatattcttc |
242 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
286357 |
attggagtagggaagaaaggtgatatattcttc |
286325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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