View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17331_low_22 (Length: 227)

Name: NF17331_low_22
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17331_low_22
NF17331_low_22
[»] chr7 (3 HSPs)
chr7 (7-227)||(30249433-30249653)
chr7 (85-138)||(25627904-25627957)
chr7 (12-57)||(25627762-25627807)
[»] chr2 (7 HSPs)
chr2 (85-142)||(34325045-34325102)
chr2 (7-64)||(34324895-34324952)
chr2 (85-139)||(29352756-29352810)
chr2 (162-227)||(29352650-29352715)
chr2 (10-59)||(29352911-29352960)
chr2 (85-139)||(44912813-44912867)
chr2 (85-139)||(44938120-44938174)
[»] chr8 (2 HSPs)
chr8 (7-67)||(4027471-4027531)
chr8 (85-195)||(4027621-4027728)
[»] chr4 (2 HSPs)
chr4 (85-139)||(4877553-4877607)
chr4 (85-139)||(20426314-20426368)
[»] chr5 (4 HSPs)
chr5 (12-64)||(30651131-30651183)
chr5 (12-64)||(31777477-31777529)
chr5 (85-135)||(30651279-30651329)
chr5 (85-135)||(31777625-31777675)
[»] chr6 (1 HSPs)
chr6 (85-128)||(13477593-13477635)
[»] scaffold0129 (1 HSPs)
scaffold0129 (12-48)||(17614-17650)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 30249433 - 30249653
Alignment:
Q  7 ttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgtctaaataatcctaaagcattggagatttatagtctaagatgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30249433 ttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgtctaaataatcctaaagcatgggagatttatagtctaagatgt 30249532  T
Q  107 aacacttggaaaaaacttgatgtcaatatgccttcgcgttcagactacagagatctattaaacacgaatgatggaatatgtcattggttgtctgaaactg 206  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30249533 aacacttggaaaaaacttgatgtcaatatgccttcgcggtcatactacagagatctattaaacacgaatgatggaatatgtcattggttgtctgaaactg 30249632  T
Q  207 atgatcaactttgcttggtat 227  Q
    |||||||||||||||||||||    
T  30249633 atgatcaactttgcttggtat 30249653  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 25627904 - 25627957
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcc 138  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  25627904 ggagatttatagtctaagatgtaacacttggaaagaacttcatgtcgatatgcc 25627957  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 25627762 - 25627807
Alignment:
Q  12 ttcatggatttggttataaccgtgttagagatgactatacgattat 57  Q
    ||||||||||||||||| ||| || |||||||||||||| ||||||    
T  25627762 ttcatggatttggttatgaccatgctagagatgactataagattat 25627807  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 34325045 - 34325102
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgccttcg 142  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  34325045 ggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgccttcg 34325102  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 34324895 - 34324952
Alignment:
Q  7 ttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt 64  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||    
T  34324895 ttcttttcatggatttggttatgaccatgttagagatgactataagattattaggtgt 34324952  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 29352810 - 29352756
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct 139  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| || |||||    
T  29352810 ggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcgatctgcct 29352756  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 29352715 - 29352650
Alignment:
Q  162 tattaaacacgaatgatggaatatgtcattggttgtctgaaactgatgatcaactttgcttggtat 227  Q
    ||||| |||||||||||||||| ||||||||||||  | ||| | ||||||||||||| |||||||    
T  29352715 tattatacacgaatgatggaatttgtcattggttgagtaaaaataatgatcaactttggttggtat 29352650  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 29352960 - 29352911
Alignment:
Q  10 ttttcatggatttggttataaccgtgttagagatgactatacgattatta 59  Q
    |||| |||||||||||||| || |||||||||||||||||| ||||||||    
T  29352960 tttttatggatttggttatgactgtgttagagatgactataagattatta 29352911  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 44912867 - 44912813
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct 139  Q
    |||||||||||| ||||| |||||| ||||||  ||||||||| |||||||||||    
T  44912867 ggagatttatagcctaaggtgtaactcttggagtaaacttgatatcaatatgcct 44912813  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 44938174 - 44938120
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct 139  Q
    ||||||||||||  |||| |||||  ||||||| |||||||||||||||||||||    
T  44938174 ggagatttatagcttaaggtgtaattcttggaagaaacttgatgtcaatatgcct 44938120  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 4027471 - 4027531
Alignment:
Q  7 ttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgtcta 67  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  4027471 ttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtcta 4027531  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 4027621 - 4027728
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgccttcgcgttcagactacagagatctattaaacacgaatgatggaata 184  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||  | || || |   | || ||||| ||||||||||||||||     
T  4027621 ggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgctttcggatacaaacca---acatatattatacacgaatgatggaatt 4027717  T
Q  185 tgtcattggtt 195  Q
    |||||||||||    
T  4027718 tgtcattggtt 4027728  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 4877553 - 4877607
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct 139  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||    
T  4877553 ggagatttatagtctaagaagtaactcttggaagaaacttgatttcaatatgcct 4877607  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 20426314 - 20426368
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct 139  Q
    ||||||||||||  ||||||||||| |||||| |||||||||| |||||||||||    
T  20426314 ggagatttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcct 20426368  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 30651131 - 30651183
Alignment:
Q  12 ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt 64  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||    
T  30651131 ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt 30651183  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 31777477 - 31777529
Alignment:
Q  12 ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt 64  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||    
T  31777477 ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt 31777529  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 30651279 - 30651329
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatat 135  Q
    ||||||||||||| ||||||||||||||||| || ||||| ||||| ||||    
T  30651279 ggagatttatagtttaagatgtaacacttgggaataacttcatgtcgatat 30651329  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 31777625 - 31777675
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatat 135  Q
    |||||||||||||||| |||||||||||||| || ||||| ||||| ||||    
T  31777625 ggagatttatagtctacgatgtaacacttgggaagaacttcatgtcgatat 31777675  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 13477593 - 13477635
Alignment:
Q  85 ggagatttatagtctaagatgtaacacttggaaaaaacttgatg 128  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  13477593 ggagatttatagtctaagatgtaacactt-gagaaaacttgatg 13477635  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 17650 - 17614
Alignment:
Q  12 ttcatggatttggttataaccgtgttagagatgacta 48  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  17650 ttcatggatttggttatgaccatgttagagatgacta 17614  T

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