View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_3 (Length: 444)
Name: NF17331_low_3
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 41804769 - 41804345
Alignment:
| Q |
20 |
ctgcccataaaggttatttagctacaaatttttatgttacatattagcctcttactcacacaacattgttttatttagatacatatagatatattaatat |
119 |
Q |
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| T |
41804769 |
ctgcccataaaggttatttagctacaaatttttatgttacatattagtctcttactcacacaacattgttttatttagatacatatagatatattaatat |
41804670 |
T |
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| Q |
120 |
aagacacaacacaagtcattgccacacaaatgatcattgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgatattgttact |
219 |
Q |
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| T |
41804669 |
aacacacaacacaagtcattgccacacaaatgatcattgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgatattgttact |
41804570 |
T |
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| Q |
220 |
tgtgtgatctatagaaggacaaaagttgtcatgcaaagtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatacaatgacca |
319 |
Q |
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| T |
41804569 |
tgtgtgatctatagaaggacaaaaggtgtcatgcaaagtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatacaatgacca |
41804470 |
T |
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| Q |
320 |
aacttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaaggg |
419 |
Q |
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| T |
41804469 |
aacttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaaggg |
41804370 |
T |
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| Q |
420 |
aaactagaacaactgaaacaatggc |
444 |
Q |
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| T |
41804369 |
aaactagaacaactgaaacaatggc |
41804345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 24 - 443
Target Start/End: Complemental strand, 3385483 - 3385064
Alignment:
| Q |
24 |
ccataaaggttatttagctacaaatttttatgttacatattagcctcttactcacacaacattgttttatttagatacatatagatatattaatataaga |
123 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3385483 |
ccataaaggttatttagctacaaatttttatgttgcatattactctcttactcacacaacattgttttatttagatacatatagatatattaatataaca |
3385384 |
T |
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| Q |
124 |
cacaacacaagtcattgccacacaaatgatcattgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgatattgttacttgtg |
223 |
Q |
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| T |
3385383 |
cacaacacaagccattgaaacacaaacgatcattgatcatggaagatcacttacaacttgaggagcatctttgccactggatgcgatcttgttacttctg |
3385284 |
T |
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| Q |
224 |
tgatctatagaaggacaaaagttgtcatgcaaagtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatacaatgaccaaact |
323 |
Q |
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| T |
3385283 |
taatcattagaagaacaaaacttgtcatgcaaagtccaaaggtaaggattaaccaaacatatattatacaaaatcgtacaatctagacattgcccaaact |
3385184 |
T |
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| Q |
324 |
tttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaagggaaac |
423 |
Q |
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| T |
3385183 |
tttgagatttgtaaatagcatcatctttcttcagttgattacctcttcctccatcctcggcattataaccattcagaagtattgccactacaagggaaac |
3385084 |
T |
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| Q |
424 |
tagaacaactgaaacaatgg |
443 |
Q |
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| T |
3385083 |
tagaacaagtgaagcaatgg |
3385064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 4215726 - 4215651
Alignment:
| Q |
323 |
ttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattca |
398 |
Q |
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| T |
4215726 |
ttttcagatttgtaaatatcatcgtctttctttggttgattacttgtttctgcaccctcagcacaataaccattca |
4215651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 443
Target Start/End: Complemental strand, 34357232 - 34357114
Alignment:
| Q |
322 |
cttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaagggaa |
421 |
Q |
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||||||| |||| |||| ||||||||||||||| || | ||| |||||||| || |||||||| ||| |||||||| ||||| ||||| ||| || |
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| T |
34357232 |
cttttgatatttataaacaccatcatctttcttatgttggttatctcttcctgcaccctcagcaccatagccattcag---cattgcaacaactaggaaa |
34357136 |
T |
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| Q |
422 |
actagaacaactgaaacaatgg |
443 |
Q |
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| T |
34357135 |
actagaacaagtgaagcaatgg |
34357114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 41814327 - 41814389
Alignment:
| Q |
287 |
ttatacaaaatcatacaatctatacaatgaccaaacttttgagatttgtaaataccatcatct |
349 |
Q |
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| T |
41814327 |
ttatacaaaatcaaacaatcgataccctgatcaagcttttgagatttgtaaatatgatcatct |
41814389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 4218271 - 4218239
Alignment:
| Q |
319 |
aaacttttgagatttgtaaataccatcatcttt |
351 |
Q |
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| T |
4218271 |
aaacttttgagatttgtaaatacgatcatcttt |
4218239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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