View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_4 (Length: 399)
Name: NF17331_low_4
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 25744992 - 25745361
Alignment:
| Q |
1 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaacttgaatgaaataatcacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744992 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaacttgaatgaaataatcacctt |
25745091 |
T |
|
| Q |
101 |
gataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaattagatgctcttgccaat |
200 |
Q |
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| T |
25745092 |
gataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaattagatgctcttgcc--- |
25745188 |
T |
|
| Q |
201 |
gaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactggtttaagtaata |
300 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25745189 |
-----aatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatactggtttaagtaatg |
25745283 |
T |
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| Q |
301 |
atgacttgaagcatacctgagaaagatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatg |
378 |
Q |
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| T |
25745284 |
atgacttgaagcatacctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatg |
25745361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 4349063 - 4348684
Alignment:
| Q |
1 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatgaaataatcacc |
98 |
Q |
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| T |
4349063 |
agcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataatcccc |
4348964 |
T |
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| Q |
99 |
ttgataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagctaaattagatgc |
190 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |||||||||| ||||| ||| ||||||||| |
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| T |
4348963 |
ttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaactatattagatgc |
4348864 |
T |
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| Q |
191 |
tcttgccaatgaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactggt |
290 |
Q |
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| T |
4348863 |
tcttgccaatgaa--------tgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggt |
4348772 |
T |
|
| Q |
291 |
ttaagtaataatgacttgaagcatacctgagaaagatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatg |
378 |
Q |
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| T |
4348771 |
ttaagtaattatgacttgaagcatacctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatg |
4348684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 18928523 - 18928595
Alignment:
| Q |
309 |
aagcatacctgagaaagatgaaggactctcga---agtatgagggtccaagcctccaactttagtcatagatg |
378 |
Q |
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|||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||| |||||||||| |
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| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatg |
18928595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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