View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_6 (Length: 380)
Name: NF17331_low_6
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 41 - 268
Target Start/End: Original strand, 39517040 - 39517277
Alignment:
| Q |
41 |
tcaatagaatctagtatctgcctatatagcaacaaagctgccgatacaggccatctactagcagaact------------------ttctgcctcatcaa |
122 |
Q |
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| T |
39517040 |
tcaatagaatctaatatctgcctatataacaacaatgctgcccatacaggccatctactagcagaactgagctctgaaacacccttttctgcttcatcaa |
39517139 |
T |
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| Q |
123 |
agaacattcttgccctttttatttttatttgtcccttcatgaaatttctctatttgtctgttacttttccacgtacaatgtcttcatatctgataggcca |
222 |
Q |
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| T |
39517140 |
aaaacattcttgccctttt------tatttgtcccttcatgaaatttctccatttgtctgttacttttccacgcataatgtcttc--atctgatatgcca |
39517231 |
T |
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| Q |
223 |
gcttgtgctagctcatcttgagggagatacgctcttcctcttctag |
268 |
Q |
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| T |
39517232 |
gcttgtgctagctcatcttgagggagatacactcttcctcttctag |
39517277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 39517976 - 39518069
Alignment:
| Q |
271 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggatt |
364 |
Q |
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| T |
39517976 |
tcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaagccttggatt |
39518069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 32687438 - 32687516
Alignment:
| Q |
274 |
tctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttg |
352 |
Q |
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| T |
32687438 |
tctccaacatctctgagtatgttggtaagctgatttgcaattcccaaggccaaggcagcattgtatacactctctgttg |
32687516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 17380468 - 17380553
Alignment:
| Q |
271 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagc |
356 |
Q |
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| T |
17380468 |
tcttctccaacgtctctaagtatgttggtaagttgattagcaatgccaagtgccaatgcagcattgtagatgctttcagttgaagc |
17380553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 17379934 - 17380001
Alignment:
| Q |
41 |
tcaatagaatctagtatctgcctatatagcaacaaagctgccgatacaggccatctactagcagaact |
108 |
Q |
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| T |
17379934 |
tcaatagaatctaatatctgcctatacaacagcaaagatgcccaaacaggccatctactagctgaact |
17380001 |
T |
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