View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17331_low_7 (Length: 379)
Name: NF17331_low_7
Description: NF17331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17331_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 126 - 365
Target Start/End: Complemental strand, 118413 - 118177
Alignment:
| Q |
126 |
ttcttagcaggtttaactgatacctatacaacaagtacattatgcttcttataactctcaacctagtatttttgccatgattaaccctggcgtaccaagt |
225 |
Q |
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| T |
118413 |
ttcttagcaggtttaactgatacctatacaacaagtacattatgcttcttataactctcaacctagtatttttgccatgattaaccctggcgtaccaagt |
118314 |
T |
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| Q |
226 |
gacgaatgattcttacaattatgttaatattcaagttagtcactatatacatatggaaaggaggccacctaatgcagtagggcgaattagcatgccataa |
325 |
Q |
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| T |
118313 |
gacgaatgattcttacaattatgttaatattcaagttagtc---atatacatatggaaaggaggccacctaatgcagtagggcgaattagcatgccataa |
118217 |
T |
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| Q |
326 |
gtcttgccttaaagaaatactacataggtgaacaacatgt |
365 |
Q |
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| T |
118216 |
gtcttgccttaaagaaatactacataggtgaacaacatgt |
118177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 119670 - 119551
Alignment:
| Q |
1 |
tagagatggagatagacagaaaataaatgaggtgttgaataattagtgatgtccttatataattattgaaaaataaccctaattgaagtttaagtcttgg |
100 |
Q |
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| T |
119670 |
tagagatggagatagaaagaaaataaatgaggtgttgaataattagggatgtccttatataattattgaaaaataaccttaattgaagtttaagtcttgg |
119571 |
T |
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| Q |
101 |
tatatgaatcacaatcacat |
120 |
Q |
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| T |
119570 |
tatatgaatcacaatcacat |
119551 |
T |
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