View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17332_high_5 (Length: 335)

Name: NF17332_high_5
Description: NF17332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17332_high_5
NF17332_high_5
[»] chr4 (14 HSPs)
chr4 (18-214)||(38979178-38979378)
chr4 (82-220)||(50656956-50657094)
chr4 (82-156)||(50657604-50657678)
chr4 (115-220)||(7988227-7988332)
chr4 (153-221)||(38983311-38983379)
chr4 (172-220)||(39844895-39844943)
chr4 (115-161)||(6680286-6680332)
chr4 (170-220)||(52720596-52720646)
chr4 (143-220)||(5929190-5929267)
chr4 (116-189)||(6246814-6246887)
chr4 (115-159)||(50709719-50709763)
chr4 (128-185)||(22499931-22499988)
chr4 (303-335)||(12641110-12641142)
chr4 (115-147)||(37639415-37639447)
[»] chr1 (15 HSPs)
chr1 (91-213)||(46097399-46097520)
chr1 (143-220)||(42843884-42843961)
chr1 (172-219)||(29148162-29148209)
chr1 (115-220)||(11032163-11032268)
chr1 (115-221)||(11426851-11426957)
chr1 (115-189)||(31788220-31788294)
chr1 (114-189)||(3789281-3789356)
chr1 (148-219)||(11031431-11031502)
chr1 (115-189)||(7463445-7463519)
chr1 (115-161)||(9430504-9430550)
chr1 (115-189)||(11469111-11469185)
chr1 (115-221)||(13361601-13361707)
chr1 (115-189)||(14925286-14925360)
chr1 (170-220)||(41465235-41465285)
chr1 (127-207)||(46827856-46827936)
[»] chr5 (9 HSPs)
chr5 (222-312)||(42687694-42687784)
chr5 (118-220)||(6381514-6381616)
chr5 (150-219)||(38064142-38064211)
chr5 (172-219)||(6380848-6380895)
chr5 (150-220)||(3135922-3135992)
chr5 (115-161)||(4554715-4554761)
chr5 (140-190)||(25075004-25075054)
chr5 (140-190)||(25132973-25133023)
chr5 (170-219)||(39149468-39149517)
[»] chr2 (14 HSPs)
chr2 (64-188)||(35215240-35215364)
chr2 (82-188)||(35214615-35214721)
chr2 (107-220)||(3148192-3148305)
chr2 (115-177)||(9371000-9371062)
chr2 (138-220)||(28223787-28223869)
chr2 (115-189)||(42370894-42370968)
chr2 (115-163)||(42369699-42369747)
chr2 (114-189)||(26021038-26021113)
chr2 (115-189)||(4976449-4976523)
chr2 (115-189)||(4994356-4994430)
chr2 (115-161)||(8536830-8536876)
chr2 (115-189)||(37545706-37545780)
chr2 (170-219)||(4769051-4769100)
chr2 (127-219)||(9958697-9958789)
[»] chr3 (9 HSPs)
chr3 (172-219)||(46187148-46187195)
chr3 (109-178)||(51802491-51802560)
chr3 (116-220)||(46187832-46187936)
chr3 (150-216)||(46993324-46993390)
chr3 (153-220)||(13810580-13810647)
chr3 (114-189)||(50305650-50305725)
chr3 (115-189)||(38337421-38337495)
chr3 (153-219)||(41638480-41638546)
chr3 (127-211)||(38279417-38279501)
[»] chr7 (10 HSPs)
chr7 (150-219)||(8466517-8466586)
chr7 (127-219)||(46252221-46252313)
chr7 (143-220)||(9124368-9124445)
chr7 (115-219)||(27599211-27599315)
chr7 (116-207)||(12732259-12732350)
chr7 (177-219)||(12138159-12138201)
chr7 (173-219)||(41236789-41236835)
chr7 (115-161)||(46757482-46757528)
chr7 (173-221)||(9123612-9123660)
chr7 (150-194)||(46251415-46251459)
[»] scaffold0181 (2 HSPs)
scaffold0181 (150-220)||(15077-15147)
scaffold0181 (169-220)||(15909-15960)
[»] chr8 (10 HSPs)
chr8 (124-220)||(43433810-43433906)
chr8 (127-219)||(36734-36826)
chr8 (127-219)||(9484265-9484357)
chr8 (115-189)||(12349997-12350071)
chr8 (127-189)||(38572252-38572314)
chr8 (115-161)||(38686361-38686407)
chr8 (115-189)||(43924962-43925036)
chr8 (115-189)||(43972030-43972104)
chr8 (143-219)||(2601203-2601279)
chr8 (145-220)||(26579266-26579341)
[»] scaffold0189 (1 HSPs)
scaffold0189 (115-189)||(12803-12877)
[»] chr6 (4 HSPs)
chr6 (179-219)||(32079799-32079839)
chr6 (142-189)||(2038626-2038673)
chr6 (179-219)||(18246177-18246217)
chr6 (128-188)||(34034199-34034259)
[»] scaffold0148 (1 HSPs)
scaffold0148 (235-265)||(12597-12627)
[»] scaffold0175 (1 HSPs)
scaffold0175 (179-219)||(26263-26303)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 38979378 - 38979178
Alignment:
Q  18 agatggtaggagaagtgtgatgccaatgaataaacagggaagaagatg--gtggagggtgagaggtgatggaggagagagaagaatggtaggagatagtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38979378 agatggtaggagaagtgtgatgccaatgaataaacagggaagaagacacagtggagggtgagaggtgatggaggagagagaagaatggtaggagatagtg 38979279  T
Q  116 tgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcc--tatggtgggaaagttttccactttcccatgtgaaat 213  Q
    | |||| ||||||| |||||||||||||||||||||||||||||||||||||  |||||| |  |||  ||||||||||||||||||| |||||||||||    
T  38979278 tattgaatgtctataataaaactatgttcttcacttaatctaatggcttaaaacaacttttctatatattgggaaagttttccacttttccatgtgaaat 38979179  T
Q  214 g 214  Q
    |    
T  38979178 g 38979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 50657094 - 50656956
Alignment:
Q  82 gatggaggagagagaagaatggtaggagatagtgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatg 181  Q
    ||||||||| |||||||| ||||  ||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||| | ||| ||||||| | |||    
T  50657094 gatggaggaaagagaagagtggtgagagatagtgtgttgagtgtttatgataaaactatgtacttcatttaatctgatggttaaaaataacttttccatg 50656995  T
Q  182 gtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||||  ||||| | | || |||||||||| ||||||    
T  50656994 gtgggaagattttcaagtgtctcatgtgaaataccacct 50656956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 50657604 - 50657678
Alignment:
Q  82 gatggaggagagagaagaatggtaggagatagtgtgttgagtgtctatgataaaactatgttcttcacttaatct 156  Q
    |||||| || |||||||| || |  |||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  50657604 gatggatgaaagagaagagtgatgagagatagtgtgttgagtgtctatgataaaattatgtacttcatttaatct 50657678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 7988227 - 7988332
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatg 214  Q
    |||||||| | ||||||||| | ||||||| | ||||||||||||||   |||  ||||||||||||||| |||||  || | ||||||||||| |||||    
T  7988227 gtgttgagagactatgataatattatgttccttacttaatctaatggtccaaaaaaactttcctatggtgagaaaggatttccctttcccatgttaaatg 7988326  T
Q  215 ccacct 220  Q
    ||||||    
T  7988327 ccacct 7988332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 38983311 - 38983379
Alignment:
Q  153 atctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacctc 221  Q
    |||||||||||||||  |||||| |||||||||||||||||||   ||| |||||||||||| ||||||    
T  38983311 atctaatggcttaaaacaacttttctatggtgggaaagttttctcattttccatgtgaaatgtcacctc 38983379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 39844943 - 39844895
Alignment:
Q  172 ctttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||    
T  39844943 ctttcctatggtgggaaaggattcccctttcccatgtgaaatgccacct 39844895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 6680286 - 6680332
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatgg 161  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatgg 6680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 52720646 - 52720596
Alignment:
Q  170 aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    ||||||||||||||||||| |||||  || |||||||||||||||||||||    
T  52720646 aactttcctatggtgggaatgttttataccttcccatgtgaaatgccacct 52720596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 5929267 - 5929190
Alignment:
Q  143 tcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||| |||||||||||| | |||  |  |||||||||||||||| ||||||  ||||||||||||||||| |||||    
T  5929267 tcttcaattaatctaatggttaaaaacatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacct 5929190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 6246887 - 6246814
Alignment:
Q  116 tgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    ||||||||||||||||||||| ||||||||  || | |||||||||   ||| ||||||||| |||||||||||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaa 6246814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 50709763 - 50709719
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaat 159  Q
    |||||||||||||||||||||||||||||||  |||| |||||||    
T  50709763 gtgttgagtgtctatgataaaactatgttctctactttatctaat 50709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 22499931 - 22499988
Alignment:
Q  128 atgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgg 185  Q
    ||||||||||||||||||  | || ||| ||||| ||||| |||||||||||||||||    
T  22499931 atgataaaactatgttctctatttgatccaatggtttaaaataactttcctatggtgg 22499988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 12641142 - 12641110
Alignment:
Q  303 atttatattcggcttaattgcacttttggaccc 335  Q
    ||||||||| |||||||||||||||||||||||    
T  12641142 atttatattaggcttaattgcacttttggaccc 12641110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 37639415 - 37639447
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttc 147  Q
    |||||||| ||||||||||||||||||||||||    
T  37639415 gtgttgagggtctatgataaaactatgttcttc 37639447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 46097520 - 46097399
Alignment:
Q  91 gagagaagaatggtaggagatagtgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaag 190  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  46097520 gagagaaaaatggtaagagatagtgtgttgagtgtctataataaaactatgttcttcatttaatctaatggcttaaa-caactttcctatggtgggaaag 46097422  T
Q  191 ttttccactttcccatgtgaaat 213  Q
    |||||| ||||||||||||||||    
T  46097421 ttttcccctttcccatgtgaaat 46097399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 42843961 - 42843884
Alignment:
Q  143 tcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||| |||||||||||| | |||| |  |||||||||||||||| ||||||  ||||||||||||||||| |||||    
T  42843961 tcttcaattaatctaatggttaaaagcatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacct 42843884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 29148209 - 29148162
Alignment:
Q  172 ctttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  29148209 ctttcctatgatgggaaagttttacactttcccatgtgaaaagccacc 29148162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 11032163 - 11032268
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagt-aactttcctatggtgggaaagttttccactttcccatgtgaaat 213  Q
    |||||||| ||| ||||||| | | ||||| | |||||||||||||| | ||| | |||||||| ||||||||||| | |||| ||||||||||| ||||    
T  11032163 gtgttgagagtccatgataagaatgtgttcattacttaatctaatgg-tcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaat 11032261  T
Q  214 gccacct 220  Q
    |||||||    
T  11032262 gccacct 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 11426957 - 11426851
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatg 214  Q
    |||||||  ||||||||||||||| ||||||| | ||||||||||||   ||| || |||||| ||||||||||| | || | |||| |||||  |||||    
T  11426957 gtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaactctttcccttttccatgctaaatg 11426858  T
Q  215 ccacctc 221  Q
    |||||||    
T  11426857 ccacctc 11426851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 31788220 - 31788294
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||| ||||| ||||||||  | || ||||||||| | ||| ||||||||| |||||||||||    
T  31788220 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaa 31788294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 3789281 - 3789356
Alignment:
Q  114 tgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    ||||||||| || |||||||| | ||||| ||| | |||||||||||||| |||  |||||||||||||| |||||    
T  3789281 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggtaggaaa 3789356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 11031502 - 11031431
Alignment:
Q  148 acttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||||||||||||   ||  ||||||||| ||||||||||| | |||| ||||||||||| ||||||||||    
T  11031502 acttaatctaatggtcaaatttaactttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 7463519 - 7463445
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||  ||||||||||||||| ||||||| | ||||||||||||   ||| || |||||| |||||||||||    
T  7463519 gtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaa 7463445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 9430504 - 9430550
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatgg 161  Q
    |||||||| || || ||||||||||||||||| ||||||||||||||    
T  9430504 gtgttgagagtttaggataaaactatgttctttacttaatctaatgg 9430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 11469185 - 11469111
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||||||||| ||||||||  || | |||||||||   ||| || |||||| |||||||||||    
T  11469185 gtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaa 11469111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 13361707 - 13361601
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatg 214  Q
    |||||||| | | ||||||||  | ||||||| |||| ||||  ||| | ||| ||||||||| |||||||||||||||| | |||||| || | |||||    
T  13361707 gtgttgagagaccatgataaatgtgtgttctttacttgatctggtggttcaaattaactttcccatggtgggaaagttttaccctttcctatattaaatg 13361608  T
Q  215 ccacctc 221  Q
    |||||||    
T  13361607 ccacctc 13361601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 14925286 - 14925360
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||||||||| ||||||||  | || |||||||||   ||| || |||||| |||||||||||    
T  14925286 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaa 14925360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 41465285 - 41465235
Alignment:
Q  170 aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||||| |||||||||| ||||| ||| ||||||||||||| |||||||    
T  41465285 aactttcccatggtgggaaggttttacaccttcccatgtgaaaagccacct 41465235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 46827936 - 46827856
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatg 207  Q
    |||||||||| | ||||||| | |||||||||||| | ||| ||  ||| ||||||| |||||||||||  ||||||||||    
T  46827936 tatgataaaaatgtgttctttatttaatctaatggttaaaattagtttttctatggtaggaaagttttcacctttcccatg 46827856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 42687784 - 42687694
Alignment:
Q  222 gctttaatatttatgcacttttacattcttgctctttactttctcttgttatttatatttgtgcaaatttatattccagcaatttatattc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42687784 gctttaatatttatgcacttttacattcttgctctttactttctcttgttatttatatttctgcaaatttatattccagcaatttatattc 42687694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 6381514 - 6381616
Alignment:
Q  118 ttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgcca 217  Q
    ||||| ||||||||||| || ||||||||  ||||||||| ||| | ||| | ||||||||||||||| ||||||||   ||||||||||||||||||||    
T  6381514 ttgagagtctatgataagacaatgttctttgcttaatctagtggttaaaattgactttcctatggtggaaaagttttatcctttcccatgtgaaatgcca 6381613  T
Q  218 cct 220  Q
    |||    
T  6381614 cct 6381616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 38064211 - 38064142
Alignment:
Q  150 ttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  38064211 ttaatctaatggttaaaagtaactttcccatggtgggaaagttttcacccttcccatgtgaaatgccacc 38064142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 6380895 - 6380848
Alignment:
Q  172 ctttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  6380895 ctttcctatgatggggaagttttacactttcccatgtgaaatgccacc 6380848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 3135992 - 3135922
Alignment:
Q  150 ttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||||| ||||| |||  |||||||| |||||||||| |||||  || |||||||||||||||||||||    
T  3135992 ttaatctagtggctaaaataaactttcccatggtgggaaggttttataccttcccatgtgaaatgccacct 3135922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 4554761 - 4554715
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatgg 161  Q
    |||||||||||||||||||||| ||||||||  |||| |||||||||    
T  4554761 gtgttgagtgtctatgataaaagtatgttctctactttatctaatgg 4554715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 25075004 - 25075054
Alignment:
Q  140 tgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaag 190  Q
    ||||||||| |||||||||||||| ||  ||||||||| ||||||||||||    
T  25075004 tgttcttcaattaatctaatggctaaagttaactttcccatggtgggaaag 25075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 25132973 - 25133023
Alignment:
Q  140 tgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaag 190  Q
    ||||||||| |||||||||||||| ||  ||||||||| ||||||||||||    
T  25132973 tgttcttcaattaatctaatggctaaagttaactttcccatggtgggaaag 25133023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 39149468 - 39149517
Alignment:
Q  170 aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||| ||||||||||||  |||  ||||||||||||||||||||||    
T  39149468 aactttcccatggtgggaaaggattcacctttcccatgtgaaatgccacc 39149517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 35215240 - 35215364
Alignment:
Q  64 tggtggagggtgagaggtgatggaggagagagaagaatggtaggagatagtgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggct 163  Q
    |||||| || |||| || ||||||||| |||||| | ||||  |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |    
T  35215240 tggtggtggatgagtggggatggaggaaagagaatagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggtt 35215339  T
Q  164 taaagtaactttcctatggtgggaa 188  Q
     |||  |||||||||||||||||||    
T  35215340 aaaaacaactttcctatggtgggaa 35215364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 35214721 - 35214615
Alignment:
Q  82 gatggaggagagagaagaatggtaggagatagtgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatg 181  Q
    ||||||||| |||||||| ||||  |||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||| | |||  |||||||| |||    
T  35214721 gatggaggaaagagaagagtggtgagagatagtgtgttgagcgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatg 35214622  T
Q  182 gtgggaa 188  Q
    |||||||    
T  35214621 gtgggaa 35214615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 3148305 - 3148192
Alignment:
Q  107 gagatagtgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccat 206  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||| | |||  |||||| | ||| ||||||  ||||| | | |||| |    
T  3148305 gagatagtgtgttgagtgtctataataaaactatgtacttcatttaatctgatggttaaaaacaacttttccatgatgggaagattttcaagtgtcccgt 3148206  T
Q  207 gtgaaatgccacct 220  Q
    || |||||||||||    
T  3148205 gttaaatgccacct 3148192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 9371062 - 9371000
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcc 177  Q
    |||||||| || |||||||||| ||||||||||| |||||||||||||| ||| | |||||||    
T  9371062 gtgttgagagtgtatgataaaagtatgttcttcatttaatctaatggctgaaatttactttcc 9371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 28223869 - 28223787
Alignment:
Q  138 tatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    ||||||||||||||||||||||   | ||   |||||||||||||||||||||  ||   |||||||||||||||||||||||    
T  28223869 tatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaaggattaacctttcccatgtgaaatgccacct 28223787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 42370894 - 42370968
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||| ||||||||||||||||||||| |||| ||||| ||||||||||  | | | ||||||| |||||||||||    
T  42370894 gtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaa 42370968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 42369747 - 42369699
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggct 163  Q
    |||||||||||||||||||||| ||||||||  |||| |||||||||||    
T  42369747 gtgttgagtgtctatgataaaattatgttctctactttatctaatggct 42369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 26021113 - 26021038
Alignment:
Q  114 tgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    ||||||||| || |||||||| | ||||| ||| | |||||||||||||| |||  |||||||||||||| |||||    
T  26021113 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggtaggaaa 26021038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 4976449 - 4976523
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||| ||||| ||||||||  | || ||||||||| | ||| ||||||||| || ||||||||    
T  4976449 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaa 4976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 4994356 - 4994430
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||| ||||| ||||||||  | || ||||||||| | ||| ||||||||| || ||||||||    
T  4994356 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaa 4994430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 8536830 - 8536876
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatgg 161  Q
    ||||||||||||||||||||||| |||||||  |||| |||||||||    
T  8536830 gtgttgagtgtctatgataaaaccatgttctctactttatctaatgg 8536876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 37545780 - 37545706
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||||||| | | ||||| | ||||||||||||||   ||  ||||||||| |||||||||||    
T  37545780 gtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaa 37545706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 4769051 - 4769100
Alignment:
Q  170 aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||||||||||||||  |||| |||| |||||| ||||||||||    
T  4769051 aactttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 9958697 - 9958789
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||| | | ||||||| ||| ||||| |||| | ||| |||||||| |||||||||||||  ||   ||||||||||| ||||||||||    
T  9958697 tatgataagattgtgttctttactaaatctgatggatgaaattaactttcttatggtgggaaaggattgatctttcccatgttaaatgccacc 9958789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 46187195 - 46187148
Alignment:
Q  172 ctttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46187195 ctttcctatggtgggaaagttttacactttcccatgtgaaatgccacc 46187148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 51802491 - 51802560
Alignment:
Q  109 gatagtgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcct 178  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||| |||| | ||| ||||||||||    
T  51802491 gatagtgtgttgagtgtctgtgataaaactatgtacttcatttaatcttatggttaaaaataactttcct 51802560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 46187832 - 46187936
Alignment:
Q  116 tgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgc 215  Q
    ||||||| ||||||||||| || ||||||||  ||||||||| ||| | ||| | ||| ||| |||||| |||||||||   ||||||||||||||||||    
T  46187832 tgttgagagtctatgataagacaatgttctttgcttaatctagtggttaaaattgactctcccatggtgagaaagttttatcctttcccatgtgaaatgc 46187931  T
Q  216 cacct 220  Q
    |||||    
T  46187932 cacct 46187936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 46993390 - 46993324
Alignment:
Q  150 ttaatctaatggcttaaagt-aactttcctatggtgggaaagttttccactttcccatgtgaaatgcc 216  Q
    |||||||||||||| ||||| |||||| | |||||||||||||||| ||||||||||||| |||||||    
T  46993390 ttaatctaatggct-aaagtgaacttttccatggtgggaaagttttacactttcccatgttaaatgcc 46993324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 13810580 - 13810647
Alignment:
Q  153 atctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    ||||||||||| ||   ||||||||||| ||||||||||||| | ||||||||||| ||||| |||||    
T  13810580 atctaatggctaaattgaactttcctatcgtgggaaagttttaccctttcccatgttaaatgtcacct 13810647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 50305725 - 50305650
Alignment:
Q  114 tgtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    ||||||||| || |||||||| | ||||| ||| | |||||||||||||| |||  |||||||||||||| |||||    
T  50305725 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggtaggaaa 50305650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 38337421 - 38337495
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||||||||| ||||||||  | ||||||||| ||   ||| || |||||| |||||||||||    
T  38337421 gtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaa 38337495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 41638546 - 41638480
Alignment:
Q  153 atctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||||||||| |||  || ||||| ||| |||||| ||||| ||| ||||||||||||||||||||    
T  41638546 atctaatggctaaaataaattttcccatgatgggaaggttttacaccttcccatgtgaaatgccacc 41638480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 38279501 - 38279417
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaa 211  Q
    |||||||||| | ||||||||| ||||||| | | |  ||| ||||||||| ||||||||||||  |||  ||||||||||||||    
T  38279501 tatgataaaattgtgttcttcaattaatctgacgaccaaaattaactttcccatggtgggaaaggattcacctttcccatgtgaa 38279417  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 8466517 - 8466586
Alignment:
Q  150 ttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||||| | ||||||||||||| ||||||| |||||||||  | ||||||||||||||||||||    
T  8466517 ttaatctaatggttaaaagtaactttcccatggtggaaaagttttcacccttcccatgtgaaatgccacc 8466586  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 46252221 - 46252313
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||| |||||| |||| |||||  ||||||| |||  |||||||||||||||  |||||||||| |||||| || ||||||||||||    
T  46252221 tatgataaaattatgttattcaattaattcaatggctaaaatcaactttcctatggtgaaaaagttttcccctttcctatctgaaatgccacc 46252313  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 9124368 - 9124445
Alignment:
Q  143 tcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||| |||||||||||| | |||| |  ||||| |||||||||| ||||||  ||||||||||||||||| |||||    
T  9124368 tcttcaattaatctaatggttaaaagcatttttcccatggtgggaaggttttcacctttcccatgtgaaatggcacct 9124445  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 27599315 - 27599211
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatg 214  Q
    |||||||||||||||||||| | | ||||| | ||||||||||||||   ||  ||||||||| |||||||||||    ||| ||||||||| | |||||    
T  27599315 gtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaatg 27599216  T
Q  215 ccacc 219  Q
    |||||    
T  27599215 ccacc 27599211  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 12732350 - 12732259
Alignment:
Q  116 tgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatg 207  Q
    ||||||| ||||||||||||||||||||||| || | |||||||||   | | | ||||||| ||||||||||| | || | ||||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttcccatg 12732259  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 12138201 - 12138159
Alignment:
Q  177 ctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||| |||||||||||||  ||||||||||||||||||||||    
T  12138201 ctatgatgggaaagttttctcctttcccatgtgaaatgccacc 12138159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 41236835 - 41236789
Alignment:
Q  173 tttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||| |||||||||| ||||| ||| ||||||||||||||||||||    
T  41236835 tttcccatggtgggaaggttttacaccttcccatgtgaaatgccacc 41236789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 46757528 - 46757482
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatgg 161  Q
    |||||||||||||||||||||| ||||||||  |||| |||||||||    
T  46757528 gtgttgagtgtctatgataaaattatgttctctactttatctaatgg 46757482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 9123660 - 9123612
Alignment:
Q  173 tttcctatggtgggaaagttttccactttcccatgtgaaatgccacctc 221  Q
    ||||||||||||||||  |||||  |||| |||||||||||||||||||    
T  9123660 tttcctatggtgggaagattttcaccttttccatgtgaaatgccacctc 9123612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 46251459 - 46251415
Alignment:
Q  150 ttaatctaatggcttaaagtaactttcctatggtgggaaagtttt 194  Q
    |||||||||||||| |||  |||||||| ||||||||||||||||    
T  46251459 ttaatctaatggctaaaatcaactttcccatggtgggaaagtttt 46251415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 15147 - 15077
Alignment:
Q  150 ttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||||| ||||||| |||  |||| |||||||||||||||||||| | ||||||||||| |||||||||||    
T  15147 ttaatcaaatggctaaaatcaactgtcctatggtgggaaagttttaccctttcccatgttaaatgccacct 15077  T

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Target: scaffold0181; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 15909 - 15960
Alignment:
Q  169 taactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    ||||||||| || ||||||||||||| | ||||||||||| |||||||||||    
T  15909 taactttcccatagtgggaaagttttaccctttcccatgttaaatgccacct 15960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 43433906 - 43433810
Alignment:
Q  124 gtctatgataaaactatgttcttcacttaatctaatggcttaaagt-aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    ||||||||||| | | ||||||||| || ||||||||||| ||||| |||||||| |||||||||||   |||| ||||||||||| |||||||||||    
T  43433906 gtctatgataagattgtgttcttcaattcatctaatggct-aaagtgaactttcccatggtgggaaatgattcccctttcccatgttaaatgccacct 43433810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 36734 - 36826
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||| | |||| |||| |||||| ||||||| |||  |  |||||||||||||||||||||||   || ||||||||||||||||||    
T  36734 tatgataaaattgtgttattcaattaatccaatggctaaaatcatttttcctatggtgggaaagttttcacattccccatgtgaaatgccacc 36826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 9484357 - 9484265
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagt-aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||||||||| ||||||||| ||||| |||||| ||||||| || |||  ||||||||||| |||||  || |||| |||||||||||||||    
T  9484357 tatgataaaactgtgttcttcatttaatttaatgg-ttaaagtaaatttttttatggtgggaatgttttataccttccaatgtgaaatgccacc 9484265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 12350071 - 12349997
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    ||||||||||||||||||||||  |||||||| |||| ||||||||| | ||| ||  ||| | |||||||||||    
T  12350071 gtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaa 12349997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 38572314 - 38572252
Alignment:
Q  127 tatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||| | | ||||||||| |||||||||||| ||||  ||||||||| |||||||||||    
T  38572314 tatgataagattgtgttcttcaattaatctaatggtttaagttaactttcccatggtgggaaa 38572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 38686407 - 38686361
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatgg 161  Q
    ||||||||||||||||||||||| |||||||  |||| |||||||||    
T  38686407 gtgttgagtgtctatgataaaaccatgttctctactttatctaatgg 38686361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 43924962 - 43925036
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||||||||| ||||||||  | ||||||||| ||   ||| ||||||||  |||||||||||    
T  43924962 gtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaa 43925036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 43972030 - 43972104
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||| ||||| ||||||||  | || ||||||||| | ||| ||||||||| || ||||||||    
T  43972030 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaa 43972104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 2601203 - 2601279
Alignment:
Q  143 tcttcacttaatctaatggcttaaagtaactttcctatggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    |||||| |||||||||||| | |||  |  ||| |||||||||||||||||||   |||||||||||||||| ||||    
T  2601203 tcttcaattaatctaatggttaaaaacattttttctatggtgggaaagttttcacttttcccatgtgaaatgtcacc 2601279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 26579266 - 26579341
Alignment:
Q  145 ttcacttaatctaatggcttaaagt-aactttcctatggtgggaaagttttccactttcccatgtgaaatgccacct 220  Q
    |||| |||||| ||||| ||||||| |||||||| ||||||| ||||||||   ||||||||||| |||||||||||    
T  26579266 ttcaattaatcaaatgg-ttaaagtgaactttcccatggtggaaaagttttaggctttcccatgttaaatgccacct 26579341  T

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Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 12803 - 12877
Alignment:
Q  115 gtgttgagtgtctatgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    |||||||||||||||||||||| ||||||||  | || |||||||||   ||| ||||||||| |||||||||||    
T  12803 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaa 12877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 32079799 - 32079839
Alignment:
Q  179 atggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  32079799 atggtgggaaagttttagactttcccatgtgaaatgccacc 32079839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 2038673 - 2038626
Alignment:
Q  142 ttcttcacttaatctaatggcttaaagtaactttcctatggtgggaaa 189  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||||||    
T  2038673 ttcttcaattaatctaatggcttaagttaactttcccatggtgggaaa 2038626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 18246217 - 18246177
Alignment:
Q  179 atggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  18246217 atggtgggaaagttttataccttcccatgtgaaatgccacc 18246177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 34034259 - 34034199
Alignment:
Q  128 atgataaaactatgttcttcacttaatctaatggcttaaagtaactttcctatggtgggaa 188  Q
    ||||||||||||||||||  | || ||| ||||| ||||| ||||||||| ||||||||||    
T  34034259 atgataaaactatgttctctatttgatccaatggtttaaaataactttcccatggtgggaa 34034199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 12597 - 12627
Alignment:
Q  235 tgcacttttacattcttgctctttactttct 265  Q
    |||||||||||||||||||||||||||||||    
T  12597 tgcacttttacattcttgctctttactttct 12627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 26303 - 26263
Alignment:
Q  179 atggtgggaaagttttccactttcccatgtgaaatgccacc 219  Q
    ||||||| |||||||| ||||||||||||| ||||||||||    
T  26303 atggtggaaaagttttacactttcccatgttaaatgccacc 26263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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