View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17332_high_7 (Length: 283)
Name: NF17332_high_7
Description: NF17332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17332_high_7 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 805371 - 805642
Alignment:
| Q |
12 |
agagatgaaaacttcgagctatgaagtaccgacacagacatcgatactgaacattacacgatcactgacagtgacacactgacacaaatacaaccttgaa |
111 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
805371 |
agagaagaagacttcgagctatgaaataccgacacagacatcgatactgaacattacacgatcactgacagtgatacactgacacaaatacaaccttgaa |
805470 |
T |
|
| Q |
112 |
agttgaaaccatgacataattaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagataattaatgtagtttggtaaagtatatgtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
805471 |
agttgaaaccatgacataattaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagataattaatgtagtttggtaaagtatatgtg |
805570 |
T |
|
| Q |
212 |
atttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctatttt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
805571 |
atttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctatttt |
805642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 1266294 - 1266242
Alignment:
| Q |
131 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagata |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1266294 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatctaaatgagata |
1266242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 36053791 - 36053861
Alignment:
| Q |
210 |
tgatttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctatttt |
283 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36053791 |
tgatttaatgctcagattgcagcctacctgccta---tagtgtgtgttataaattggctctttgcagctatttt |
36053861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University