View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17332_low_1 (Length: 566)
Name: NF17332_low_1
Description: NF17332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17332_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 35373597 - 35373076
Alignment:
| Q |
18 |
taagctaactctcatggcaatcaaaaatctccactcgacgaacttgtgcacaacaaaattcacaaacaacaaattgacactacaaaatttcaaagagact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35373597 |
taagctaactctcatggcaatcaaaaatctccactcgacgaacttgtgcacaacaaaattcacaaacaacaaattgacactacaaaatttcaaagagact |
35373498 |
T |
|
| Q |
118 |
agaaatgaaagaatataaaatttcaaagagacta---aaattgaacacaaactaaaattgctagttattgccttatatagaaatgtcgaaaagttattga |
214 |
Q |
| |
|
| ||||||||||||||||||||||| || | | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35373497 |
aaaaatgaaagaatataaaatttcagggacattttttattttgaacacaaactaaaattgctagtt---gccttatatagaaatgtcgaaaagttattga |
35373401 |
T |
|
| Q |
215 |
caaaaattaatcgctcaagtaatatcgataaattgagatataaaatgaaagtaaccattcacttttagtagtaatttcaaaacatcttaaatttaaatag |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35373400 |
caaaaattaatcgatcaagtaatatcgataaatcgagatataaaatgaaagtaaccattcacttttagtagtaatttcaaaacatcttaaatttaaatag |
35373301 |
T |
|
| Q |
315 |
cataaatggannnnnnnnnnnnnnnnnagaacatacatggaaatcttagagttcaaaaactccggtcaaccttcatgttttgataatgaaaaacaaactt |
414 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35373300 |
catacatgg------------ttttttagaacatacatggaaatcttagagttcaaaaactccggtcaaccttcatgttttgataatgaaaaacaaactt |
35373213 |
T |
|
| Q |
415 |
tgataactcaaacaagaagaatgtatatcgataacataaacccatttgtcacaattggttaatttgtgagaatattcttcagaggttggaaaccatgacg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35373212 |
tgataactcaaacaagaagaatgtatatcaataatgtaaacccatttgtcacacttggttaatttgtgaggatattcttcagaggttggaaaccatgacg |
35373113 |
T |
|
| Q |
515 |
aatacttgcttcccaaactttctcaatgctaagtata |
551 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35373112 |
aatacttgcttcccaaactttctcagtgctaagtata |
35373076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 433 - 551
Target Start/End: Complemental strand, 35360825 - 35360707
Alignment:
| Q |
433 |
gaatgtatatcgataacataaacccatttgtcacaattggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaac |
532 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35360825 |
gaatgtatatcgataatgtaaacccatttgtcacacttggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaac |
35360726 |
T |
|
| Q |
533 |
tttctcaatgctaagtata |
551 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35360725 |
tttctcaatgctaagtata |
35360707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 35383140 - 35383079
Alignment:
| Q |
490 |
tcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtata |
551 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35383140 |
tctttagaggttggaaaccatgacgaatacttgcttcccaaactttctcagtgctaagtata |
35383079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 542
Target Start/End: Original strand, 19625613 - 19625650
Alignment:
| Q |
505 |
aaccatgacgaatacttgcttcccaaactttctcaatg |
542 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19625613 |
aaccatgacgaatacttgcttcccatactttctcaatg |
19625650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 542
Target Start/End: Complemental strand, 19691260 - 19691220
Alignment:
| Q |
502 |
ggaaaccatgacgaatacttgcttcccaaactttctcaatg |
542 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
19691260 |
ggaaaccatggcgaatacttgcttcccatactttctcaatg |
19691220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 542
Target Start/End: Complemental strand, 19701845 - 19701805
Alignment:
| Q |
502 |
ggaaaccatgacgaatacttgcttcccaaactttctcaatg |
542 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
19701845 |
ggaaaccatggcgaatacttgcttcccatactttctcaatg |
19701805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University