View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17332_low_2 (Length: 401)
Name: NF17332_low_2
Description: NF17332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17332_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 56469081 - 56469466
Alignment:
| Q |
1 |
ctttaaatcatccagtcttatccctttccccgaacctggctttccaaagtcatgtgccctcagcttgttcataatcaaggacctctcgtttggcctcgtc |
100 |
Q |
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| T |
56469081 |
ctttaaatcatccagtcttatccctttccccgaacccggctttccaaagtcatgtgccctcagcttgttcataatcaaggacctctcgtttggcctcgtc |
56469180 |
T |
|
| Q |
101 |
gtaaatgccttatgtttaagaattacaagcaaatgagacctcaaaaccaacccacataactctggtgcttctaagaatggaggctcatcaatcacaggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56469181 |
gtaaatgccttatgtttaagaattacaagcaaatgagacctcaaaaccaacccacataactctggagcttctaagaatggaggctcatcaatcacaggaa |
56469280 |
T |
|
| Q |
201 |
acccattatgtcgcgtcacctttaaagtgtgcacaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56469281 |
acccattatgtcgcgtcacctttaaagtgtgcacaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaac |
56469380 |
T |
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| Q |
301 |
taaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacctttgttaa |
386 |
Q |
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| T |
56469381 |
taaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacctttgttaa |
56469466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 386
Target Start/End: Complemental strand, 155341 - 155088
Alignment:
| Q |
133 |
atgagacctcaaaaccaacccacataactctggtgcttctaagaatggaggctcatcaatcacaggaaacccattatgtcgcgtcacctttaaagtgtgc |
232 |
Q |
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|||||||||||| ||||||||||| ||||| || || || || ||||||||||||| || ||||| || | |||| ||||| || |||| |||| |
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| T |
155341 |
atgagacctcaacaccaacccacacaactcgggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgc |
155242 |
T |
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| Q |
233 |
acaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcactt |
332 |
Q |
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| ||||||||||||||||| || ||| | || | |||||||||||||||||||||||| || |||||||||| ||||||||| || |||||||| ||| |
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| T |
155241 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
155142 |
T |
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| Q |
333 |
ccaaataaggcaaccccttcatttccactatttgatcataaacacctttgttaa |
386 |
Q |
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||| |||||| | ||||||| |||| || |||||||||||||||||||||| |
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| T |
155141 |
ccatataaggtagtcccttcaacgccacaatctgatcataaacacctttgttaa |
155088 |
T |
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