View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17332_low_3 (Length: 391)
Name: NF17332_low_3
Description: NF17332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17332_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 33116516 - 33116141
Alignment:
| Q |
1 |
caggacaagtgttgttgaaacgataagtttctatttcacttatcattggagaacgagtttcggtttgtcggaaagtgacagtaagaagcacaagtgataa |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33116516 |
caggacaggtgttgttgaaatgataagtttctatttcacttatcattggagaatgagtttcggtttgtcagaaagtgacagtaagaagcacaagtgataa |
33116417 |
T |
|
| Q |
101 |
gacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataatcgaaccaaacgcattcaacccagcagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33116416 |
gacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagagaaccaaacgcattcaacccagcagtg |
33116317 |
T |
|
| Q |
201 |
ataagagacagaagcattgcggtttgattagatgcaaaaccagccagctgaacaatagttgggctgaagtacattacggtattgattcctacaaattgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116316 |
ataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgtt |
33116217 |
T |
|
| Q |
301 |
ggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116216 |
ggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttat |
33116141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 33119398 - 33119329
Alignment:
| Q |
268 |
agtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
337 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
33119398 |
agtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
33119329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 1083896 - 1084271
Alignment:
| Q |
1 |
caggacaagtgttgttgaaacgataagtttctatttcacttatcattggagaacgagtttcggtttgtcggaaagtgacagtaagaagcacaagtgataa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1083896 |
caggacaggtgttgttgaaacgataagtttctatttcacttatcattggagaatgagtttcggtttgtcggaaagtgacagtaagaagcacaagtgataa |
1083995 |
T |
|
| Q |
101 |
gacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataatcgaaccaaacgcattcaacccagcagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1083996 |
gacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcaatgaaatatatgcttataagcgaaccaaacgtattcaacccagcagtg |
1084095 |
T |
|
| Q |
201 |
ataagagacagaagcattgcggtttgattagatgcaaaaccagccagctgaacaatagttgggctgaagtacattacggtattgattcctacaaattgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1084096 |
ataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacgatattgattcctacaaattgtt |
1084195 |
T |
|
| Q |
301 |
ggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1084196 |
ggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtcatcatacttat |
1084271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 340
Target Start/End: Original strand, 21559150 - 21559358
Alignment:
| Q |
132 |
ttctttctcccggttttatcgatgaaatatatgcttataatcgaaccaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattag |
231 |
Q |
| |
|
||||| || ||||| || ||||| || |||||||| | |||||||||||| ||||| | ||||| |||| || |||||||| | ||| |||| || | |
|
|
| T |
21559150 |
ttcttccttccggtcttgtcgataaagtatatgctcaaaatcgaaccaaatgcattaattccagctgtgacgagcgacagaagaagtgctgttttgtttg |
21559249 |
T |
|
| Q |
232 |
atgcaaaaccagccagctgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaa |
331 |
Q |
| |
|
||||||||||||| || ||||| || ||||| ||| |||||||||| || |||||||| |||||||||||||| ||||| || |||| ||||||||| || |
|
|
| T |
21559250 |
atgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatataa |
21559349 |
T |
|
| Q |
332 |
acctcttct |
340 |
Q |
| |
|
||||||||| |
|
|
| T |
21559350 |
acctcttct |
21559358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 21492446 - 21492619
Alignment:
| Q |
113 |
caaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataatcgaaccaaacgcattcaacccagcagtgataagagacaga |
212 |
Q |
| |
|
|||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| | ||| ||||| || ||||| | |||| |||||| ||||||||| |
|
|
| T |
21492446 |
caaactaatcaatgcaagtttcttcctcccagttttgtcgatgaaatatatgctcagaattgaaccgaatgcattgaggccagaagtgattagagacaga |
21492545 |
T |
|
| Q |
213 |
agcattgcggtttgattagatgcaaaaccagccagctgaacaatagttgggctgaagtacattacggtattgat |
286 |
Q |
| |
|
|| | ||| ||| || || |||||||| |||||||||||||| | || ||| |||||||||| || ||||| |
|
|
| T |
21492546 |
agaagtgctgttctttttgacgcaaaaccggccagctgaacaattgaaggactgtagtacattaccgtgttgat |
21492619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University