View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17332_low_6 (Length: 312)

Name: NF17332_low_6
Description: NF17332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17332_low_6
NF17332_low_6
[»] chr8 (2 HSPs)
chr8 (8-303)||(24691733-24692030)
chr8 (9-53)||(31654693-31654737)
[»] chr6 (2 HSPs)
chr6 (77-133)||(20809087-20809143)
chr6 (9-61)||(8186447-8186499)
[»] chr5 (1 HSPs)
chr5 (9-69)||(11795248-11795308)
[»] chr2 (1 HSPs)
chr2 (9-59)||(41492896-41492946)
[»] chr1 (2 HSPs)
chr1 (9-59)||(11897134-11897184)
chr1 (9-69)||(44668084-44668143)
[»] chr7 (1 HSPs)
chr7 (9-70)||(38441540-38441601)
[»] chr4 (1 HSPs)
chr4 (8-60)||(46797804-46797856)
[»] chr3 (1 HSPs)
chr3 (73-117)||(30790775-30790819)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 24692030 - 24691733
Alignment:
Q  8 tatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgttaatttatgtgtattttccaaatgtgtgtttgttgtag 107  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24692030 tatcaacttttgttgacccaaatttcttttaaaaataggaccggaacgagtaccatatttgttaatttatgtgtattttccaaatgtgtgtttgttgtag 24691931  T
Q  108 aagataaaaagtagaagagagatagatagaaacataaacaaagtgtcactttgagatgtctatattttgattttcaaataacacaagaaatgttcaagac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24691930 aagataaaaagtagaagagagatagatagaaacataaacaaagtgtcac-ttgagatgtctatattttgattttcaaataacacaagagatgttcaagac 24691832  T
Q  208 ttcaactattttgggt---caaaagatgttataaatttgtgctatgtgatgtgagattgttttgatcttgtacaataaggcttgagagcatgatgagta 303  Q
    ||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24691831 ttcaactattttgggtcaacaagagatgttataaatttgtgctatgtgatgtgagattgttttgatcttgtacaataaagcttgagagcatgatgagta 24691733  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 31654693 - 31654737
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggag 53  Q
    ||||||||||||||||||||| |||||||| ||| ||||| ||||    
T  31654693 atcaacttttgttgacccaaaattcttttataaataggaccggag 31654737  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 20809087 - 20809143
Alignment:
Q  77 tgtgtattttccaaatgtgtgtttgttgtagaagataaaaagtagaagagagataga 133  Q
    ||||||||||  |||||||||| ||||||| |||||||||||||  |||||||||||    
T  20809087 tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagataga 20809143  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 8186447 - 8186499
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtacc 61  Q
    ||||||||||||||| |||||||||||||| ||| ||||| || | |||||||    
T  8186447 atcaacttttgttgatccaaatttcttttataaataggaccggggggagtacc 8186499  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 11795248 - 11795308
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgt 69  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||||| |||||  ||||||||    
T  11795248 atcaacttttgttgacccaaaattctcttataaataggactggagggagtataatatttgt 11795308  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 41492946 - 41492896
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 59  Q
    |||||||||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  41492946 atcaacttttgttgacccaaatttctcttataaataggaccggagggagta 41492896  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 11897134 - 11897184
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 59  Q
    |||||||||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  11897134 atcaacttttgttgacccaaatttctcttataaataggaccggagggagta 11897184  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 44668143 - 44668084
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgt 69  Q
    ||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||| |||||||||    
T  44668143 atcaacttttgttgacccaaaattctcttataaataggaccggagggagta-catatttgt 44668084  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 38441540 - 38441601
Alignment:
Q  9 atcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgtt 70  Q
    ||||||||||||||||||||| |||| ||| ||| ||||| ||||  ||||| |||||||||    
T  38441540 atcaacttttgttgacccaaaattctcttataaataggaccggaggaagtactatatttgtt 38441601  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 46797804 - 46797856
Alignment:
Q  8 tatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 60  Q
    |||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  46797804 tatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 46797856  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 30790775 - 30790819
Alignment:
Q  73 tttatgtgtattttccaaatgtgtgtttgttgtagaagataaaaa 117  Q
    ||||||||||||||  ||||||||||  |||||||||||||||||    
T  30790775 tttatgtgtattttttaaatgtgtgtaagttgtagaagataaaaa 30790819  T

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