View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17333_high_2 (Length: 658)
Name: NF17333_high_2
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17333_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 39023871 - 39023309
Alignment:
| Q |
17 |
gttcatacacttgtattatgtgccaaaatgattcacttggcacatttttcttgtttgtgttgtaagcattgcttgttggaggaaatcgaaattacggcat |
116 |
Q |
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| T |
39023871 |
gttcatacacttgtattatgtgccaaaatgattcacttggcacatttttcttgtttgtgttgtaagcattgcttgttggaggaaatcgaaattacggcat |
39023772 |
T |
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| Q |
117 |
attatggagcttattatgctagaagctaatggttttgaagacatttttagtcgtatctagggtgttttaacaacagaccagttgcatcaagactgtcatc |
216 |
Q |
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| T |
39023771 |
attatggagcttattatgctagaagctaatggttttgaagacatttttagtcgtatctagggtgttttaacaacagaccagttgcatcaagactgtcatc |
39023672 |
T |
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| Q |
217 |
gagtttcgcagcattaccagcaatggcacagtggactgcttcaacagatgaatatgtgaaatgcaatcttgaagcatcaacttttaatgatgtgagatgt |
316 |
Q |
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| T |
39023671 |
gagtttcgcagcattaccagcaatggcacggtggactacttcaacagatgaatatgtgaaatgcaatcttgaagcgtcaacttttaatgatgtgagatgt |
39023572 |
T |
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| Q |
317 |
gctggcattggtttctgccttcgaaattttggttggcacgagctggcagccagtacggattggaaaatatggaacttcaaaccagttgaaggagtggctt |
416 |
Q |
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| T |
39023571 |
gctggcattggtttctgccttcaaaattttggttgagacgagctggcagccagtacggattggaaaatatggaacttcaaaccagttgaaggagtggctt |
39023472 |
T |
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| Q |
417 |
ggagtctcatccaagcaattagtaatagtggatagcttccttcagcctcaatctcacatcttattttttagatgaattgcatgcaagtagttaatgatgt |
516 |
Q |
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| T |
39023471 |
ggagtctcatccaagcaattagtaatagtggatagcttccttcagcctcaatctcacatcttattttttagatgaattgcatgcaagtagttaatgatgt |
39023372 |
T |
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| Q |
517 |
gtttaatgttaagtttaagttaaaattatacagtatggatttttagtaaatgcatgtatatct |
579 |
Q |
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| T |
39023371 |
gctaaatgttaattttaagttaaaattataccttatggatttttagtaaatgcatgtatatct |
39023309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 563 - 630
Target Start/End: Complemental strand, 39023172 - 39023105
Alignment:
| Q |
563 |
taaatgcatgtatatctatcaaattgtttttgttatgcgatctccaaatagtaaatgttccctctctt |
630 |
Q |
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| T |
39023172 |
taaatgcatgtatatctatcaaattgtttttgttatgcgatctccaaatagtaaatgttccctctctt |
39023105 |
T |
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