View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17333_high_4 (Length: 364)
Name: NF17333_high_4
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17333_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 28319217 - 28319563
Alignment:
| Q |
10 |
aagaatatacaattcatttaacaataaacttgtacaaaaagctagtctcttgtaatgtcgagagaaatgttaaaaacttgtaccaaataatcaaataaag |
109 |
Q |
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| T |
28319217 |
aagaaaatacaattcatttaacaatgaacttgtacaaaaagctagtctcctgtaatgtcgagagaaatgttaaaaacttgtaccaaataatcaaataaag |
28319316 |
T |
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| Q |
110 |
atatgaagtaacttaca------cactgggcacagtaatagtaatttggcttaataacaaacttcaactttagtaaaattaattcgaaattgcattgtca |
203 |
Q |
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| T |
28319317 |
atatgaagtaacttacataggtacactgggcacagtaatagtaatttggcttaataacaaacttcaactttagtaaaattaattcgaaattgcattgtca |
28319416 |
T |
|
| Q |
204 |
ccatcccaccacctaagttgtatagttcttttcttcatctttattgttctttgattttgtgtttatattcaacaaatttgtccagtcaaaatacaataaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319417 |
ccatcccaccacctaagttgtatagttcttttcttcatctttattgttctttgattttgtgtttatattcaacaaatttgtccagtcaaaatacaataaa |
28319516 |
T |
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| Q |
304 |
aggtaaacttgctcatcaaaatacctatgaaagtgatccaaaaaact |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319517 |
aggtaaacttgctcatcaaaatacctatgaaagtgatccaaaaaact |
28319563 |
T |
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