View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17333_high_7 (Length: 332)

Name: NF17333_high_7
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17333_high_7
NF17333_high_7
[»] chr4 (1 HSPs)
chr4 (37-332)||(54490577-54490872)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 37 - 332
Target Start/End: Original strand, 54490577 - 54490872
Alignment:
Q  37 gaaaactgggaagaagaattctgagaatgaccgttctgctattgtgaataacggtaacggttataatttgaggagtaacggtgttgttggtaatgttagt 136  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54490577 gaaaaatgggaagaagaattctgagaatgaccgttctgctattgtgaataacggtaacggttataatttgaggagtaacggtgttgttggtaatgttagt 54490676  T
Q  137 gtaaatggtaaagagaatgatagtgtaaacaatggagcttttgatgtaaataggctccagaagaaggttaggaataaaggtgggaatggaaagaaaacag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54490677 gtaaatggtaaagagaatgatagtgtaaacaatggagcttttgatgtaaataggctccagaagaaggttaggaataaaggtgggaatggaaagaaaacag 54490776  T
Q  237 atgctgttgtaaccaaggctgagccgaaaaaggtggttaagaaaaatagggtttgggatgaaaaacccgttgaaactaaattagattttacggatc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54490777 atgctgttgtaaccaaggctgagccgaaaaaggtggttaagaaaaatagggtttgggatgaaaaacccgttgaaactaaattagattttacggatc 54490872  T

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