View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17333_high_9 (Length: 308)
Name: NF17333_high_9
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17333_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5893134 - 5892844
Alignment:
| Q |
1 |
tcaacttttgtgaaatctttgtgaggattctcactaagcttttgaatcaatctcatgttctcgtcttttcggatttcggaaaaggagttgagacgatgag |
100 |
Q |
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| T |
5893134 |
tcaacttttgtgaaatctttgtgagaattctcactaagcttttgaatcaatctcatattctcgtcttttcggatttcggaaaaggagttgagacgatgag |
5893035 |
T |
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| Q |
101 |
tggagagtatttcaatcgagcttatacgacgtaagttgcgccaatgatctccataggacgaggtaataatgtttgtattgttgaagccaagatacttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5893034 |
tggagagtatttcaatcgagcttatacgacgtaagttgcgccaatgatctccataggacgaggtaataatgtttgtattgttgaagccaagatacttggt |
5892935 |
T |
|
| Q |
201 |
tttgatagaggttaaacggtttgcaaaaattacgtcgtttttggtgaaacattcttcagcaatggatgctgatgaaacaacagccacaaat |
291 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5892934 |
tttgatagaggttaaacggtttgcgaaaattacgtcgtttttggtgaaacattcttcagcaatggatgctgatgaaacaacagctacaaat |
5892844 |
T |
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