View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17333_low_1 (Length: 940)
Name: NF17333_low_1
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17333_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 18 - 734
Target Start/End: Original strand, 35250351 - 35251064
Alignment:
| Q |
18 |
cgatattggcagttgatccttcataaccctcgcgagatatatgcaacagagtttcagcaacagtaactnnnnnnnnnnnnnnnnnnatatccatatatct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35250351 |
cgatattggcagttgatccttcataaccctcgcgagatatatgcaacagagtttcagcaacagtaacttcatcatcatcatcatcaatatccatatatct |
35250450 |
T |
|
| Q |
118 |
ttttctccagagtgcctgtcgtttcttgggcggtagaaactgatcatcaatggaagatgggagcgcatgccgtttcttgggtggtagaaactgatcctca |
217 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35250451 |
ttttctccagagcgcctgccgtttcttgggcggtagaaactgatcatcaatggaagatgggagcgcatgccgtttcttgggtggtagaaactgatcatca |
35250550 |
T |
|
| Q |
218 |
atggaagatggtgctgcagttggtgtgttagtaataccgttttgagagtgacaccacttatgttcatccaatgctttgttagaagtaaaaaccttgttgc |
317 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35250551 |
atggaagacggtgctgtagttggtgtgttagtaataccgttttgagagtgacacctcttatgttcatccaatgctttgttagaagtaaaaaccttgttgc |
35250650 |
T |
|
| Q |
318 |
aaacatcacatgagtgtttgttttgttttgcaacataattgttattatgagtaggaacagaataagnnnnnnnccatgtaatcttttgttttccagcatg |
417 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
35250651 |
aaacatcacatgagtgtttattttgttttccaacataattgttattatgagtaggaacagaataagaaaaaaaccatgcaatcttttgttttccagcatg |
35250750 |
T |
|
| Q |
418 |
attagtttcaatgaaagagaaagaagggtatttggcattggtttttggtttatgagacattttcttgttcatgaaggaagggagagtacctagcagaata |
517 |
Q |
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| T |
35250751 |
attagtttcaatgaaagagaaagaagggtatttggcattggtttttggtttatgagacattttcttgttcatgaaggaagggagagtacctagcagaata |
35250850 |
T |
|
| Q |
518 |
gggtttgttttgaattgagagggagagcgtataattgctgcttatatatctattaccaattaatccgtgccattaatccttcaataagcaatcaacgagt |
617 |
Q |
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| T |
35250851 |
gggtttgttttgaattgagagggagagcgtataattgctgcttatatatctattaccaattaatccgtgccattaatccttcaataagcaatcaacgagt |
35250950 |
T |
|
| Q |
618 |
ctaaacatgccacctaatcaatccgtgccattgagaattgctgctatgattatttttcaagcggttcctttagtttaggtacattcttcttcttttattt |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35250951 |
ctaaacatgccacctaatcaatccgtgccattgagaattgctgct---attatttttcaagcggttcctttagtttaggtacattcttcttcttttattt |
35251047 |
T |
|
| Q |
718 |
ctctatataaaactctc |
734 |
Q |
| |
|
||||||||||||||||| |
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| T |
35251048 |
ctctatataaaactctc |
35251064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 850 - 932
Target Start/End: Original strand, 35251180 - 35251261
Alignment:
| Q |
850 |
gttatgagatttgactctttaatttaaaaaagcaannnnnnnncactataatatgttcccatagcaattattttcagtataat |
932 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
35251180 |
gttatgagatttgactctttaatttaaaaaagcaattttttt-cactataatatgttcccatagcaattattttcactataat |
35251261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 27782702 - 27782778
Alignment:
| Q |
276 |
tatgttcatccaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttgttttgttttgcaaca |
352 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
27782702 |
tatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttggttttgttttccaaca |
27782778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 27777259 - 27777183
Alignment:
| Q |
276 |
tatgttcatccaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttgttttgttttgcaaca |
352 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
27777259 |
tatgtccattcaatgctttgttagaagttaaaaccttgttgcaaacatcacatgagtgttggttttgttttccaaca |
27777183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 38227584 - 38227676
Alignment:
| Q |
276 |
tatgttcatccaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttgttttgttttgcaacataattgttattatgag |
368 |
Q |
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|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |||| ||| | |||||||| |
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| T |
38227584 |
tatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttcttctgttttaccacatcattatgattatgag |
38227676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 27780673 - 27780609
Alignment:
| Q |
276 |
tatgttcatccaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttgttt |
340 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27780673 |
tatgtccattcaaagctttgttagaagtaaaaaccttgttgcaaacatcacacgagtgtttgttt |
27780609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 27780761 - 27780727
Alignment:
| Q |
179 |
agcgcatgccgtttcttgggtggtagaaactgatc |
213 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
27780761 |
agcgcctgccgtttcttgggtggtagaaactgatc |
27780727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 441453 - 441499
Alignment:
| Q |
286 |
caatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
441453 |
caatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagt |
441499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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