View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17333_low_3 (Length: 390)
Name: NF17333_low_3
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17333_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8696962 - 8696751
Alignment:
| Q |
1 |
acacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaa |
100 |
Q |
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| T |
8696962 |
acacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaa |
8696863 |
T |
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| Q |
101 |
tctttcttatggatctaatgaatatctattatacattctagatcatggtaatataatgcatgcttaattagcacaataacaccgatgctaatatcagatt |
200 |
Q |
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| T |
8696862 |
tctttcttatggatctaatgaatatctattatatattctacat---------------catgcttaattagcacaataacaccgatgctaatatcagatt |
8696778 |
T |
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| Q |
201 |
tttgaccgactaactcttattaatttt |
227 |
Q |
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| T |
8696777 |
tttgaccgactaactcttattaatttt |
8696751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 371
Target Start/End: Complemental strand, 8696724 - 8696585
Alignment:
| Q |
229 |
tcttcttgcttagcgcaactcattgcacgtaataatggactttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagca |
328 |
Q |
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| T |
8696724 |
tcttcttgcttagcgcaactcattgcacgtaataatggacttcaataaaagcaacatgg-aca--attacagcaaagaaaagaaacaaaatagctaagca |
8696628 |
T |
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| Q |
329 |
taaattgtatgtgaggatttgacccaaaaaatttgcatgtggg |
371 |
Q |
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| T |
8696627 |
taaattgtatgtggggatttgacccaaaaaatttgcatgtggg |
8696585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 8677720 - 8677916
Alignment:
| Q |
3 |
acaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatc |
102 |
Q |
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| T |
8677720 |
acaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaatagtttcctcgtatctcatcaaggtggacaatc |
8677819 |
T |
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| Q |
103 |
tttcttatggatctaatgaatatctattatacattctagatcatggtaat-------ataatgcatgcttaattagcacaataacaccgatgctaatat |
194 |
Q |
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| T |
8677820 |
tttaatatggatctaatgattatctattat--attctacatcatggtactataatgcataatgcatgcttaattaacacaataacgcggatgctaatat |
8677916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 8692561 - 8692663
Alignment:
| Q |
267 |
actttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagcataaattgtatgtgaggatttgacccaaaaaatttgcat |
366 |
Q |
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| T |
8692561 |
acttcaataaaagcaacatgggaca--attacagcaaagaaaagaaacaaaatagttaagcataaattgtatgtgggggtttgacccaaaaaacttgcat |
8692658 |
T |
|
| Q |
367 |
gtggg |
371 |
Q |
| |
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||||| |
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| T |
8692659 |
gtggg |
8692663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 8678379 - 8678444
Alignment:
| Q |
306 |
aaaagaaacaaaatagctaagcataaattgtatgtgaggatttgacccaaaaaat-ttgcatgtggg |
371 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||| ||||||||||| |
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| T |
8678379 |
aaaagaaacaaaatagctaagcat-aattgcatgtggggatttgaccaaaaaaatattgcatgtggg |
8678444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 8678314 - 8678347
Alignment:
| Q |
225 |
tttctcttcttgcttagcgcaactcattgcacgt |
258 |
Q |
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| T |
8678314 |
tttctgttcttgcttagcgcaactcattgcacgt |
8678347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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