View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17333_low_5 (Length: 357)
Name: NF17333_low_5
Description: NF17333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17333_low_5 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 12179 - 12517
Alignment:
| Q |
1 |
ttttaatatggctcttgatgaattgaatatctggaatatcgaagtagcgagtggaggatggtttggtgaaaagcttgataaaaatgtaaatctatttaac |
100 |
Q |
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| T |
12179 |
ttttaatatggctcttgatgaattgaatatctggaatatcgaagtagcgagtggaggatggtttggtgaaaagcttgataaaaatgtaaatctatttaac |
12278 |
T |
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| Q |
101 |
ggtatttttatcatgataaaattcatatattttttgttgttctggttttgaaattatttgtgtatgtatagtccttgaattatttgaagatacatgggag |
200 |
Q |
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| T |
12279 |
agtatttttatcatgataaaattcatatatttt-tgttgttctggttttgaaattatttgtgtatgtatagtccttgaattatttgaagatacatgggag |
12377 |
T |
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| Q |
201 |
caagagtttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattcaagtctctggaagtgcttaaggaaacggta |
300 |
Q |
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| T |
12378 |
caagagtttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattcaagtctctggaagtgcttaaggaaacggta |
12477 |
T |
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| Q |
301 |
attttataaattcaacttactcactttgttccataatact |
340 |
Q |
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| T |
12478 |
attttataaattcaacttactcactttgttccataatact |
12517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 272
Target Start/End: Original strand, 38637223 - 38637456
Alignment:
| Q |
42 |
aagtagcgagtggaggatggtttggtgaaaagcttgataaaaatgtaa---------atctatttaacggtatttttatcatgataaaattcatatattt |
132 |
Q |
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| T |
38637223 |
aagtagcaaatggagaatggttcggggaaaagcttgataaaaatgtaagaaaaataaagctatttaatagaatttttaatatgatgaaattaatatattt |
38637322 |
T |
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| Q |
133 |
tttgttgttctggttttgaaattatttgtgtatgtatagtccttgaattatttgaagatacatgggagcaagagtttgggtgaagaaaaacaaattctga |
232 |
Q |
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| T |
38637323 |
tgtgttgttttgattttgaaatc----gtctatgta--gtctttgaattattttaagctacataggagcaaaagtttggccgaagagaaacaaattctga |
38637416 |
T |
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| Q |
233 |
gagatataaagattcaacagaaagatgttgcttcattcaa |
272 |
Q |
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| T |
38637417 |
gggatataaagattctgcagaaagatgttgcttcattcaa |
38637456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 257
Target Start/End: Original strand, 38689957 - 38690107
Alignment:
| Q |
103 |
tatttttatcatgataaaattcatatat--tttttgttgttctggttttgaaattatttgtgtatgtatagtccttgaattatttgaagatacatgggag |
200 |
Q |
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| T |
38689957 |
tatttttattatgatgaaattaatatatattttttgttgttttggtattaaaatcatttgtgta------gtctttgagttatttgaagctacatggaag |
38690050 |
T |
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| Q |
201 |
caagagtttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaaga |
257 |
Q |
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| T |
38690051 |
caaaagtttggctgaggagaaacaaattctgagggatataaaaattcaacagaaaga |
38690107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 38690119 - 38690178
Alignment:
| Q |
251 |
agaaagatgttgcttcattcaagtctctggaagtgcttaaggaaacggtaattttataaa |
310 |
Q |
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| T |
38690119 |
agaaagatgttgcttcattcaaatcactagaagtgcttaaggaaacggtaatttaataaa |
38690178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 38633454 - 38633550
Alignment:
| Q |
217 |
gaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattcaagtctctggaagtgcttaaggaaacggtaattttataaattc |
313 |
Q |
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| T |
38633454 |
gaaaaaaatattctgagggatataaacattcaacagaaaggtgttgcttcattcaaatcgctaaaagttctgaaaaaaacggtaatttaatagattc |
38633550 |
T |
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