View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17334_low_4 (Length: 202)
Name: NF17334_low_4
Description: NF17334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17334_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 44984957 - 44985122
Alignment:
| Q |
15 |
atatcatatccagcgtttaaataatcttcttaatcgatgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaat |
114 |
Q |
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| T |
44984957 |
atatcatatccagcgtttaaataatcttcttaatcgatgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaat |
44985056 |
T |
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| Q |
115 |
ctcaacgagaagattaattcatctaaaaaatgaaagaaaaggtgaagaagagatggaaatgaaacc |
180 |
Q |
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| T |
44985057 |
ctcaacgagaagattaattcatctaaaaaatgaaagaaaaggtgaagaagagatggaaatgaaacc |
44985122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 40909372 - 40909207
Alignment:
| Q |
15 |
atatcatatccagcgtttaaataatcttcttaatcgatgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaat |
114 |
Q |
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| T |
40909372 |
atatcatatccagcgtttaaataatcttcttaatcgatgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaat |
40909273 |
T |
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| Q |
115 |
ctcaacgagaagattaattcatctaaaaaatgaaagaaaaggtgaagaagagatggaaatgaaacc |
180 |
Q |
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| T |
40909272 |
ctcaacgagaagattaattcatctaaaaaatgaaagaacaggtgaagaagagatggaaatgaaacc |
40909207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 44993585 - 44993716
Alignment:
| Q |
52 |
tgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaa----gattaattcatct--aaaaaat |
145 |
Q |
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| T |
44993585 |
tgatcatcat-atccacatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaacgagaattaattcatctaaaaaaaat |
44993683 |
T |
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| Q |
146 |
gaaagaaaaggtgaagaagagatggaaatgaaa |
178 |
Q |
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| T |
44993684 |
gaaagaacgtgcgaagaagagatagaaatgaaa |
44993716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 44970361 - 44970434
Alignment:
| Q |
70 |
tttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaagattaattcatctaaaaaatgaa |
148 |
Q |
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|||||||||||| ||| | ||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
44970361 |
tttgaattcaatcaaaccgaatcaaa---caaatagtagcaaaatc--aacgagaagatttattcattcaaaaaatgaa |
44970434 |
T |
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