View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17335_high_2 (Length: 579)
Name: NF17335_high_2
Description: NF17335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17335_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 149 - 562
Target Start/End: Original strand, 31576114 - 31576524
Alignment:
| Q |
149 |
tggtcactttgagggtaataataactctcaagagcgtgtacctagctgaggttggtaatgtcacttcattgcagtaacatcttcacagctttcaatttct |
248 |
Q |
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| T |
31576114 |
tggtcactttgagggtaataa---ctcttaagagcgtgtacctagctgaggttggtaatgtcacttcattgcagtaacatctgcacagctttcaatttct |
31576210 |
T |
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| Q |
249 |
cacggcacatgcacctcataaatatgtgtactaaccgtcattatacttcactggtttaggaatgaggtcattgaatgaaactcaattggatatttcaaat |
348 |
Q |
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| T |
31576211 |
cacggcacatgcacctcataaatatgtgtactaaccgtcattatacttcactggtttaggaatgaggtcattgaatgaaactcaattggatatttcaaat |
31576310 |
T |
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| Q |
349 |
tagatacttcaatagtagcttgacaaatatgaagaggttgttgcggttaacttgcaaattaagctgcaaatcttacacaaccattaaagcttattatggt |
448 |
Q |
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| T |
31576311 |
tagatacttcaatagtagcttgacaaatatgaagaggttgttacggttaacttgcaaattaagctgcaaatcttacacaaccattaaagcttattatggt |
31576410 |
T |
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| Q |
449 |
aaatcttttaagttctgatagccttctctttttaatgtttgatgcagacatcaccggttgttgatacttgatagatattcagtaatgacataggaaaaaa |
548 |
Q |
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| T |
31576411 |
aaatcttttgagttctgatagccttctctttttaatgtttgatgcagacatcaccggttgttgatacttgatagatattcagtaatgacataggaaaaaa |
31576510 |
T |
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| Q |
549 |
cagtgaaagataaa |
562 |
Q |
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| T |
31576511 |
cagtgaaagataaa |
31576524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 31576004 - 31576114
Alignment:
| Q |
16 |
ataatatatataaaattggatcctctacaactgttgtatgatcttgcagttgtatgatgatctttataactgcaacacgacacagcaaccatagaggatc |
115 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31576004 |
ataatatatatgaaattggatcctcgacaactgttgtatgatgttgcagttgtatgatgatctctataactgcaacacgacacagcaaccatagaggatc |
31576103 |
T |
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| Q |
116 |
taggttcaaat |
126 |
Q |
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||||||||||| |
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| T |
31576104 |
taggttcaaat |
31576114 |
T |
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