View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17335_high_3 (Length: 340)

Name: NF17335_high_3
Description: NF17335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17335_high_3
NF17335_high_3
[»] chr4 (2 HSPs)
chr4 (66-327)||(10110443-10110700)
chr4 (1-33)||(2222632-2222664)
[»] chr8 (3 HSPs)
chr8 (1-33)||(1937403-1937435)
chr8 (1-33)||(9187168-9187200)
chr8 (1-33)||(10736819-10736851)
[»] chr6 (1 HSPs)
chr6 (1-33)||(3795719-3795751)
[»] chr2 (2 HSPs)
chr2 (1-33)||(33228878-33228910)
chr2 (1-33)||(40535394-40535426)
[»] chr1 (3 HSPs)
chr1 (1-33)||(11215094-11215126)
chr1 (1-33)||(48643716-48643748)
chr1 (1-33)||(51050283-51050315)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 66 - 327
Target Start/End: Original strand, 10110443 - 10110700
Alignment:
Q  66 caagctagaaaccacctccaagaaatcacggttattgtctccaccttcatgtttttagaagaaaaaatagtcattttaattacttttagtgtattaatca 165  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10110443 caagctagaaaccacctccaagaaatcactgttattgtctccaccttcatgtttttagaagaaaaaatagtcattttgataacttttagtgtattaatca 10110542  T
Q  166 cacaaacttgacgacgtaattactgtatctgttttttaactagagccattagggaacttgttaacattctccttcaaataatatagagaaatgatggtta 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||       
T  10110543 cacaaacttgacgacgtaattactgtatctgttttttaactagagccactaggaaacttgttaacattctccttcaaataatatagagaagtgatgg--- 10110639  T
Q  266 attaatctgaaagacattgagaaaatcatttcataannnnnnnattaatggaacattaaaaa 327  Q
     |||||| ||||||||||||||||||||||||||||       |||||||||||||||||||    
T  10110640 -ttaatccgaaagacattgagaaaatcatttcataatattttaattaatggaacattaaaaa 10110700  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2222632 - 2222664
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2222632 tgtgtgagctctagccactaggctacttgaccc 2222664  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1937403 - 1937435
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1937403 tgtgtgagctctagccactaggctacttgaccc 1937435  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9187200 - 9187168
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  9187200 tgtgtgagctctagccactaggctacttgaccc 9187168  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10736851 - 10736819
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  10736851 tgtgtgagctctagccactaggctacttgaccc 10736819  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3795751 - 3795719
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  3795751 tgtgtgagctctagccactaggctacttgaccc 3795719  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33228910 - 33228878
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  33228910 tgtgtgagctctagccactaggctacttgaccc 33228878  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40535426 - 40535394
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  40535426 tgtgtgagctctagccactaggctacttgaccc 40535394  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11215094 - 11215126
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  11215094 tgtgtgagctctagccactaggctacttgaccc 11215126  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48643716 - 48643748
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  48643716 tgtgtgagctctagccactaggctacttgaccc 48643748  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51050283 - 51050315
Alignment:
Q  1 tgtgtgagctctagccactaggctccttgaccc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  51050283 tgtgtgagctctagccactaggctacttgaccc 51050315  T

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