View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17335_low_1 (Length: 640)

Name: NF17335_low_1
Description: NF17335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17335_low_1
NF17335_low_1
[»] chr2 (8 HSPs)
chr2 (18-490)||(7332017-7332490)
chr2 (248-333)||(7322895-7322980)
chr2 (242-320)||(7365457-7365535)
chr2 (245-321)||(7298108-7298184)
chr2 (258-310)||(7336340-7336392)
chr2 (108-139)||(7352854-7352885)
chr2 (246-284)||(7291307-7291345)
chr2 (142-174)||(7308422-7308454)


Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 7332017 - 7332490
Alignment:
Q  18 ctattgttactccaacatgaagaagagaaagttatttggttaaagaagtatacatgttcagtagttcacattcaattaaccaatccatattccattcatt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332017 ctattgttactccaacatcaagaagagaaagttatttggttaaagaagtatacatgttcagtagttcacattcaattaaccaatccatattccattcatt 7332116  T
Q  118 tacaaccatttgagtaagaaactctctctaaa-cacaagcaataacatcaaaatcacttttacttttcattgtggattcagattaaattgaaaaagaagc 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332117 tacaaccatttgagtaagaaactctctctaaaacacaagcaataacatcaaaatcacttttacttttcattgtggattcagattaaattgaaaaagaagc 7332216  T
Q  217 atccatgttagttaataatcaaataaatcagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgtttta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332217 atccatgttagttaataatcaaataaatcagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgtttta 7332316  T
Q  317 tcctccagaatttgcatttgagataaatcattaatagtttccaatttccctttcagaaactgaacatccaccaaaatttgatccgccttagcaaccgtca 416  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332317 tcctccagaatttgcatttgagataaattattaatagtttccaatttccctttcagaaactgaacatccaccaaaatttgatccgccttagcaaccgtca 7332416  T
Q  417 tcatcatcaattgtttctcnnnnnnnncttcatcaagattatcaagctgagtcaactcgttcatcggcaattgt 490  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  7332417 tcatcatcaattgtttctctttttcttcttcatcaagattatcaagctgagtcaactcgttcatcggcaattgt 7332490  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 7322895 - 7322980
Alignment:
Q  248 aactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcctccagaatttgcat 333  Q
    |||||||| ||||||||||||| ||||||  |||||| |||||||||| ||||||||||||||  | |||||||||||||||||||    
T  7322895 aactaagaagatgaagatgttgctgacttacgataaatcttcagaaagattttgagacacttcaatctatcctccagaatttgcat 7322980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 7365457 - 7365535
Alignment:
Q  242 aatcagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcct 320  Q
    ||||| |||| ||| ||||||||||||| ||| |||||||||| ||||||||| ||||  ||||||||| || ||||||    
T  7365457 aatcataactgagaagatgaagatgttgctgatttgagataaatcttcagaaaactttcaagacacttcattctatcct 7365535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 7298108 - 7298184
Alignment:
Q  245 cagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcctc 321  Q
    |||||||||||||||||||||||| || |||||||| ||| |   | ||||| |||||||||||||  |||||||||    
T  7298108 cagaactaagaggatgaagatgttttttacttgagagaaatccgtataaagcctttgagacacttcactttatcctc 7298184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 7336340 - 7336392
Alignment:
Q  258 atgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttc 310  Q
    |||||||||||| |||||  |||||||||| || |||||||||||||||||||    
T  7336340 atgaagatgttggtgactcaagataaacctccaaaaagcttttgagacacttc 7336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 7352854 - 7352885
Alignment:
Q  108 tccattcatttacaaccatttgagtaagaaac 139  Q
    ||||||||||||||||||||||||||||||||    
T  7352854 tccattcatttacaaccatttgagtaagaaac 7352885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 7291307 - 7291345
Alignment:
Q  246 agaactaagaggatgaagatgttgttgacttgagataaa 284  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  7291307 agaactaagaggatgaagatgtttttgagttgagataaa 7291345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 7308422 - 7308454
Alignment:
Q  142 tctctaaacacaagcaataacatcaaaatcact 174  Q
    ||||||||||||| |||||||||||||||||||    
T  7308422 tctctaaacacaaacaataacatcaaaatcact 7308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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