View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17335_low_5 (Length: 270)
Name: NF17335_low_5
Description: NF17335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17335_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 3390780 - 3390981
Alignment:
| Q |
7 |
tatatatccttcatatcaacaaaaatataattttattattatgttcctctttctccttctatatctaaaggactaaacctgtgtataacttcaatagtta |
106 |
Q |
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| T |
3390780 |
tatatatccttcatatcaacaaaa-tataattttattattctgttcctctttctccttgtatatctaaaggactaaacctgtgtataacttcaatagtta |
3390878 |
T |
|
| Q |
107 |
ttcaactatccttttaaagttacacatttgttatgaat------aagctnnnnnnntgtaacaaatatagacattaacaaataaatgtaatgaagataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3390879 |
ttcaactatccttttaaagttacacatttgttatgaatatgaacaagctaaaaaaatgtaacaaatatagacattaacaaataaatgtaatgaagataaa |
3390978 |
T |
|
| Q |
201 |
gtt |
203 |
Q |
| |
|
||| |
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|
| T |
3390979 |
gtt |
3390981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 3315800 - 3315668
Alignment:
| Q |
8 |
atatatccttcatatcaacaaaaatataattttattattatgttcctctttctccttctatatctaaaggactaaacctgtgtataacttcaatagttat |
107 |
Q |
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||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3315800 |
atatatcattcacatcaacaaaaatataatttcattattttgttcctctttctccttctatatctaaaggactaaacatgtgtataacttcaatagttat |
3315701 |
T |
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| Q |
108 |
tcaactatccttttaaagttacacatttgttat |
140 |
Q |
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||||||||||||||||||||||||| ||||||| |
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|
| T |
3315700 |
tcaactatccttttaaagttacacacttgttat |
3315668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 3365032 - 3364928
Alignment:
| Q |
16 |
ttcatatcaacaaaaatataattttattattatgttcctctttctccttctatatctaaaggactaaacctgtgtataacttcaatagttattcaactat |
115 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||| ||| |||| |||| ||||| ||| ||| ||| || |||||||||||||| ||| |
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| T |
3365032 |
ttcagatcaacaaaaatataattttattattctgttcctctttctcgttcaatatgtaaacgactatacccgtgcatagctacaatagttattcaaatat |
3364933 |
T |
|
| Q |
116 |
ccttt |
120 |
Q |
| |
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||||| |
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|
| T |
3364932 |
ccttt |
3364928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 15803808 - 15803685
Alignment:
| Q |
23 |
caacaaaaatataattttattattatgttcctctttctccttctatatctaaaggactaaa-cctgtgtataacttcaatagttattcaactatcctttt |
121 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||| ||| |||| |||| ||||||| || ||||||| ||||||||||||||||| |||||||| |
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| T |
15803808 |
caacaaaaatataattttattattctgtttctctttctcgttcaatatgtaaacgactaaaccccgtgtatagcttcaatagttattcaaatatcctttc |
15803709 |
T |
|
| Q |
122 |
aaagttacacatttgttatgaata |
145 |
Q |
| |
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||||||| |||| ||||| ||||| |
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|
| T |
15803708 |
aaagttaaacatgtgttacgaata |
15803685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 12597067 - 12597031
Alignment:
| Q |
35 |
aattttattattatgttcctctttctccttctatatc |
71 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
12597067 |
aattttattattatgttcctctttcttcttctatatc |
12597031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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