View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17335_low_7 (Length: 229)

Name: NF17335_low_7
Description: NF17335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17335_low_7
NF17335_low_7
[»] chr3 (14 HSPs)
chr3 (1-229)||(46174773-46175001)
chr3 (1-57)||(33995988-33996044)
chr3 (1-57)||(44761616-44761672)
chr3 (1-51)||(54626129-54626179)
chr3 (1-54)||(40247373-40247426)
chr3 (1-57)||(53928646-53928702)
chr3 (1-52)||(3999151-3999202)
chr3 (1-52)||(25419000-25419051)
chr3 (1-52)||(29448439-29448490)
chr3 (7-49)||(6131014-6131056)
chr3 (2-52)||(19254529-19254579)
chr3 (7-52)||(35338330-35338375)
chr3 (1-49)||(20498850-20498898)
chr3 (9-49)||(44277677-44277717)
[»] chr1 (12 HSPs)
chr1 (1-63)||(49197753-49197815)
chr1 (1-52)||(19451284-19451335)
chr1 (7-52)||(32588246-32588291)
chr1 (1-57)||(47781298-47781355)
chr1 (1-52)||(956112-956163)
chr1 (1-52)||(6303778-6303829)
chr1 (1-52)||(31571847-31571898)
chr1 (1-52)||(35280310-35280361)
chr1 (1-52)||(45759461-45759512)
chr1 (1-59)||(28823878-28823936)
chr1 (10-52)||(48525134-48525176)
chr1 (7-52)||(50192074-50192119)
[»] chr7 (13 HSPs)
chr7 (2-53)||(835079-835130)
chr7 (2-53)||(1200259-1200310)
chr7 (1-52)||(47879744-47879795)
chr7 (1-52)||(47914822-47914873)
chr7 (1-60)||(12894000-12894059)
chr7 (1-52)||(43392028-43392079)
chr7 (9-55)||(46121677-46121723)
chr7 (2-57)||(18916442-18916497)
chr7 (1-52)||(44343004-44343055)
chr7 (2-52)||(977415-977465)
chr7 (7-52)||(34695917-34695962)
chr7 (1-49)||(30441755-30441803)
chr7 (1-49)||(34009597-34009645)
[»] chr5 (10 HSPs)
chr5 (1-44)||(43319605-43319648)
chr5 (1-58)||(33655578-33655635)
chr5 (1-60)||(849916-849975)
chr5 (1-52)||(4771770-4771821)
chr5 (1-44)||(6461363-6461406)
chr5 (1-52)||(7016269-7016320)
chr5 (7-57)||(139849-139899)
chr5 (1-51)||(43319232-43319282)
chr5 (1-52)||(21147772-21147823)
chr5 (1-52)||(27458682-27458733)
[»] chr4 (22 HSPs)
chr4 (1-52)||(7007911-7007962)
chr4 (1-58)||(34228157-34228214)
chr4 (1-52)||(7246549-7246600)
chr4 (1-52)||(28542108-28542159)
chr4 (1-52)||(31314426-31314477)
chr4 (10-52)||(9163731-9163773)
chr4 (9-59)||(21309036-21309086)
chr4 (2-52)||(27453710-27453760)
chr4 (1-54)||(30009294-30009347)
chr4 (7-52)||(40536568-40536613)
chr4 (7-52)||(41321318-41321363)
chr4 (7-59)||(12913888-12913940)
chr4 (1-49)||(46635241-46635289)
chr4 (1-52)||(3437152-3437203)
chr4 (1-52)||(24130464-24130515)
chr4 (1-52)||(25446695-25446746)
chr4 (4-59)||(44770480-44770535)
chr4 (1-52)||(55975180-55975231)
chr4 (1-51)||(25331707-25331757)
chr4 (2-52)||(37046095-37046145)
chr4 (7-52)||(41880595-41880640)
chr4 (1-37)||(39479144-39479180)
[»] chr2 (15 HSPs)
chr2 (1-59)||(22551370-22551428)
chr2 (1-57)||(32125890-32125946)
chr2 (1-52)||(9120735-9120786)
chr2 (1-52)||(12407989-12408040)
chr2 (1-52)||(12420049-12420100)
chr2 (1-52)||(20605544-20605595)
chr2 (1-59)||(44766498-44766556)
chr2 (1-44)||(21136600-21136643)
chr2 (1-52)||(35317731-35317782)
chr2 (9-52)||(43848229-43848272)
chr2 (10-52)||(11997197-11997239)
chr2 (7-60)||(1188671-1188724)
chr2 (1-49)||(1790033-1790081)
chr2 (1-49)||(14198189-14198237)
chr2 (1-57)||(24776918-24776974)
[»] chr8 (13 HSPs)
chr8 (1-52)||(23114772-23114823)
chr8 (1-52)||(32711131-32711182)
chr8 (1-60)||(33850986-33851045)
chr8 (1-52)||(42734818-42734869)
chr8 (1-51)||(41479800-41479850)
chr8 (7-58)||(5576131-5576182)
chr8 (1-52)||(10391697-10391748)
chr8 (9-52)||(13477818-13477861)
chr8 (1-52)||(42936796-42936847)
chr8 (7-52)||(7506441-7506486)
chr8 (3-44)||(14027976-14028017)
chr8 (7-44)||(29930315-29930352)
chr8 (8-52)||(24214692-24214736)
[»] chr6 (5 HSPs)
chr6 (1-60)||(10344921-10344980)
chr6 (7-59)||(7052424-7052476)
chr6 (1-52)||(6196943-6196994)
chr6 (7-52)||(3608074-3608119)
chr6 (7-52)||(23929361-23929406)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-52)||(37668-37719)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 46174773 - 46175001
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttagcttccactccattcacattcggtcatcccttccttctact 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46174773 ctcaaaacttttttaaacaaaaattatcttttaaaatcctaatcgaatacactcccttaacttccactccattcacattcggtcatcccttccttctact 46174872  T
Q  101 ctagatcacatatgtgaagtctcatcgaacgtatatatcaattagacagttctggttttctgaagttaattgcagagtgcatacatattgaagtgacagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46174873 ctagatcacatatgtgaagtctcatcgaacgtatatatcaattagacagttctggttttctgaagttaattgcagagtgcatacatattgaagtcacagg 46174972  T
Q  201 accactaggttcttatttttgagctagtt 229  Q
    |||||||||||||||||||||||||||||    
T  46174973 accactaggttcttatttttgagctagtt 46175001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33996044 - 33995988
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    ||||| ||||||||||||||||||| || ||||||||||||||| ||||||| ||||    
T  33996044 ctcaagacttttttaaacaaaaattgtcctttaaaatcttaatccaatacaccccct 33995988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44761672 - 44761616
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| ||||||| ||||    
T  44761672 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacaccccct 44761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54626129 - 54626179
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaataca 51  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  54626129 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaataca 54626179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40247373 - 40247426
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactc 54  Q
    ||||| |||||||||||||||||||||| |||||||||  |||| |||||||||    
T  40247373 ctcaacacttttttaaacaaaaattatcctttaaaatccaaatccaatacactc 40247426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 53928702 - 53928646
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||| ||||||| ||||    
T  53928702 ctcaacacttttttaaacaaaaattatcctttaaaattctaatccaatacaccccct 53928646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3999202 - 3999151
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  3999202 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 3999151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25419000 - 25419051
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  25419000 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 25419051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29448490 - 29448439
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| | |||||||||| ||||| |||||||    
T  29448490 ctcaagacttttttaaacaaaaattgttttttaaaatcctaatccaatacac 29448439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 6131056 - 6131014
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  6131056 acttttttaaacaaaaattgtcctttaaaatcttaatctaata 6131014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 19254529 - 19254579
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  19254529 tcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 19254579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 35338330 - 35338375
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  35338330 acttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 35338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20498850 - 20498898
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||    
T  20498850 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaata 20498898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 44277677 - 44277717
Alignment:
Q  9 ttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    |||||||| ||||||||||||||||||||| ||||| ||||    
T  44277677 ttttttaagcaaaaattatcttttaaaatcctaatccaata 44277717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49197815 - 49197753
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttagctt 63  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  49197815 ctcaaaacttttttaaacaaaaattgtcttttaaaatcctaatccaatacacccccttagctt 49197753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19451335 - 19451284
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  19451335 ctcaagacttttttaaacaaaaattatcctttaaaatcataatccaatacac 19451284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 32588291 - 32588246
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||    
T  32588291 acttttttaaacaaaaattatcttttaagatcctaatccaatacac 32588246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 47781298 - 47781355
Alignment:
Q  1 ctcaaaacttttttaaacaaaa-attatcttttaaaatcttaatcgaatacactccct 57  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||| ||||||| ||||    
T  47781298 ctcaagacttttttaaacaaaaaattatcttttaaaatcctaatccaatacaccccct 47781355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 956112 - 956163
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| |||||||||||  ||||| |||||||    
T  956112 ctcaagacttttttaaacaaaaattgtcttttaaaattctaatccaatacac 956163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6303829 - 6303778
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  6303829 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 6303778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31571898 - 31571847
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||||||||| || ||||||||  ||||| |||||||    
T  31571898 ctcaaaacttttttaaacaaaaattgtcctttaaaattctaatctaatacac 31571847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35280310 - 35280361
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  35280310 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 35280361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45759512 - 45759461
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||| ||||||||||| || ||||||||| ||||| |||||||    
T  45759512 ctcaaaactttttcaaacaaaaattgtcctttaaaatcctaatccaatacac 45759461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28823936 - 28823878
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    ||||| ||||||||||||||||||| || ||| |||| |||||| ||||||| ||||||    
T  28823936 ctcaagacttttttaaacaaaaattgtcctttgaaatattaatccaatacaccccctta 28823878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 48525134 - 48525176
Alignment:
Q  10 tttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||    
T  48525134 tttttaaacaaaaattatcctttaaaatcctaatccaatacac 48525176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 50192119 - 50192074
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  50192119 acttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 50192074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 835079 - 835130
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacact 53  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  835079 tcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacact 835130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 1200259 - 1200310
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacact 53  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  1200259 tcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacact 1200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47879744 - 47879795
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||    
T  47879744 ctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacac 47879795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47914822 - 47914873
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||    
T  47914822 ctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacac 47914873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12894000 - 12894059
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttag 60  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||||| |||||||    
T  12894000 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacccccttag 12894059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43392079 - 43392028
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  43392079 ctcaatacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 43392028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 46121723 - 46121677
Alignment:
Q  9 ttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcc 55  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  46121723 ttttttcaacaaaaattatcttttaaaatcctaatccaatacactcc 46121677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 18916497 - 18916442
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    |||| ||||||||||||||||||| || ||||||||| ||||| ||||||| ||||    
T  18916497 tcaagacttttttaaacaaaaattgtcctttaaaatcataatccaatacaccccct 18916442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44343055 - 44343004
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  44343055 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 44343004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 977415 - 977465
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||| ||||||||||||||||||| |||||||||||| ||| | |||||||    
T  977415 tcaagacttttttaaacaaaaattgtcttttaaaatcctaaaccaatacac 977465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 34695917 - 34695962
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  34695917 acttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 34695962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30441755 - 30441803
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||| ||||||||||||||||||| |  ||||||||||||||| ||||    
T  30441755 ctcaagacttttttaaacaaaaattgtactttaaaatcttaatccaata 30441803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34009597 - 34009645
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||    
T  34009597 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaata 34009645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43319605 - 43319648
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatc 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  43319605 ctcaaaacttttttaaacaaaaattatcttttaaaatcctaatc 43319648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33655635 - 33655578
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctt 58  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||||||||    
T  33655635 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatctaatacactccctt 33655578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 849916 - 849975
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttag 60  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||||| |||||||    
T  849916 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacccccttag 849975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4771821 - 4771770
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||||||||| || ||||||||| ||||| |||||||    
T  4771821 ctcaaaacttttttaaacaaaaattgtcctttaaaatcctaatcaaatacac 4771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6461363 - 6461406
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatc 44  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  6461363 ctcaaaacttttttaaacaaaaattatcctttaaaatcctaatc 6461406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7016320 - 7016269
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||||||||| || ||||||||| ||||| |||||||    
T  7016320 ctcaaaacttttttaaacaaaaattgtcctttaaaatcctaatcaaatacac 7016269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 139849 - 139899
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||| ||||    
T  139849 acttttttaaacaaaaattatcctttaaaatcataatccaatacaccccct 139899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43319282 - 43319232
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaataca 51  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  43319282 ctcaagacttttttaaacaaaaattgtcttttaaaatcctaatccaataca 43319232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21147772 - 21147823
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  21147772 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 21147823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27458733 - 27458682
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  27458733 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 27458682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7007911 - 7007962
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||    
T  7007911 ctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacac 7007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34228214 - 34228157
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctt 58  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  34228214 ctcaagacttttttaaacaaaaattatcctttaaaatcataatccaatacaccccctt 34228157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7246600 - 7246549
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  7246600 ctcaagacttttttaaacaaaaattatcctttaaaatcataatccaatacac 7246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28542108 - 28542159
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  28542108 ctcaatacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 28542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31314477 - 31314426
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||||||||| |||||||    
T  31314477 ctcaatacttttttaaacaaaaattgtcctttaaaatcttaatccaatacac 31314426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 9163731 - 9163773
Alignment:
Q  10 tttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  9163731 tttttaaacaaaaattatcttttaaaatcataatccaatacac 9163773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 21309086 - 21309036
Alignment:
Q  9 ttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||| ||||||    
T  21309086 ttttttaaataaaatttatcttttaaaatcttaatccaatacaccccctta 21309036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 27453760 - 27453710
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||||||||||| ||||||||| ||||  |||||||    
T  27453760 tcaaaacttttttaaacaaaaattatcatttaaaatcctaattcaatacac 27453710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30009347 - 30009294
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactc 54  Q
    ||||||||||||||||| ||||||| || ||||||||| ||||| |||||||||    
T  30009347 ctcaaaacttttttaaataaaaattgtcctttaaaatcctaatccaatacactc 30009294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 40536613 - 40536568
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  40536613 acttttttaaacaaaaattatcctttaaaatcataatccaatacac 40536568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 41321318 - 41321363
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  41321318 acttttttaaacaaaaatcatcttttaaaatcctaatccaatacac 41321363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 12913888 - 12913940
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    |||||||||| |||||||| || ||||||||||||||| ||||||| ||||||    
T  12913888 acttttttaagcaaaaattgtcctttaaaatcttaatccaatacaccccctta 12913940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46635289 - 46635241
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||||||||||||||||||||||| || ||||||||| ||||| ||||    
T  46635289 ctcaaaacttttttaaacaaaaattgtcctttaaaatcctaatccaata 46635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3437152 - 3437203
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||  |||||||    
T  3437152 ctcaagacttttttaaacaaaaattgtcttttaaaatcctaattcaatacac 3437203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24130515 - 24130464
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  24130515 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 24130464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25446695 - 25446746
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  25446695 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 25446746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 44770535 - 44770480
Alignment:
Q  4 aaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    |||||||||||||||||||||| || ||||||||| ||||  ||||||| ||||||    
T  44770535 aaaacttttttaaacaaaaattgtcctttaaaatcataattcaatacaccccctta 44770480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 55975180 - 55975231
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  55975180 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 55975231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25331707 - 25331757
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaataca 51  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||||    
T  25331707 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaataca 25331757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 37046145 - 37046095
Alignment:
Q  2 tcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  37046145 tcaatacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 37046095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 41880640 - 41880595
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  41880640 acttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 41880595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39479180 - 39479144
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaat 37  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  39479180 ctcaagacttttttaaacaaaaattatcctttaaaat 39479144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22551428 - 22551370
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    ||||| ||||||||||||||||||| || ||||||||||||||| ||||||| ||||||    
T  22551428 ctcaagacttttttaaacaaaaattgtcctttaaaatcttaatccaatacaccccctta 22551370  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32125890 - 32125946
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| ||||||| ||||    
T  32125890 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacaccccct 32125946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9120735 - 9120786
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  9120735 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatctaatacac 9120786  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12407989 - 12408040
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  12407989 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 12408040  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12420049 - 12420100
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  12420049 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 12420100  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20605544 - 20605595
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  20605544 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 20605595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44766498 - 44766556
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||  ||||||| ||||||    
T  44766498 ctcaagacttttttaaacaaaaattgtcttttaaaatcctaattcaatacaccccctta 44766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21136643 - 21136600
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatc 44  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||    
T  21136643 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatc 21136600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35317731 - 35317782
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  35317731 ctcaatacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 35317782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 43848229 - 43848272
Alignment:
Q  9 ttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||    
T  43848229 ttttttaaacaaaaattgtcttttaaaatcataatccaatacac 43848272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 11997239 - 11997197
Alignment:
Q  10 tttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||    
T  11997239 tttttaaacaaaaattatcctttaaaatcataatccaatacac 11997197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 1188724 - 1188671
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttag 60  Q
    ||||||| | ||||||||| |||||||||||| ||||| ||||||| |||||||    
T  1188724 actttttcatacaaaaattttcttttaaaatcctaatccaatacacccccttag 1188671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1790033 - 1790081
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||    
T  1790033 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatctaata 1790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14198237 - 14198189
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaata 49  Q
    ||||||||||||||||||||||||| |  ||||||||| ||||| ||||    
T  14198237 ctcaaaacttttttaaacaaaaattgttctttaaaatcctaatccaata 14198189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24776918 - 24776974
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccct 57  Q
    ||||| ||||||||||| ||||||| || ||||||||| ||||| ||||||| ||||    
T  24776918 ctcaagacttttttaaagaaaaattgtcctttaaaatcctaatccaatacaccccct 24776974  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23114823 - 23114772
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||||||||| || ||||||||| ||||| |||||||    
T  23114823 ctcaaaacttttttaaacaaaaattgtcctttaaaatcctaatctaatacac 23114772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32711182 - 32711131
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  32711182 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 32711131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33850986 - 33851045
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttag 60  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||||| |||||||    
T  33850986 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacccccttag 33851045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42734869 - 42734818
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  42734869 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacac 42734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41479800 - 41479850
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaataca 51  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  41479800 ctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaataca 41479850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 5576182 - 5576131
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctt 58  Q
    ||||||||||||||||||| || ||||||||| ||||| ||||||| |||||    
T  5576182 acttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccccctt 5576131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10391748 - 10391697
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||| |||||||    
T  10391748 ctcaagacttttttaaacaaaaattatcctttaaaattctaatccaatacac 10391697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 13477861 - 13477818
Alignment:
Q  9 ttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||    
T  13477861 ttttttaaacaaaaattatcctttaaaatcctaatccaatacac 13477818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42936847 - 42936796
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  42936847 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 42936796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 7506486 - 7506441
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  7506486 acttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 7506441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 14028017 - 14027976
Alignment:
Q  3 caaaacttttttaaacaaaaattatcttttaaaatcttaatc 44  Q
    ||||||||||||||||||||| | |||||||||||| |||||    
T  14028017 caaaacttttttaaacaaaaaatttcttttaaaatcctaatc 14027976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 29930352 - 29930315
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatc 44  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  29930352 acttttttaaacaaaaattatcctttaaaatcctaatc 29930315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24214736 - 24214692
Alignment:
Q  8 cttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||    
T  24214736 cttttttaaacaaaaattgtcttttaaaatcctaattcaatacac 24214692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10344980 - 10344921
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacactcccttag 60  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| ||||||| |||||||    
T  10344980 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacccccttag 10344921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 7052424 - 7052476
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacactccctta 59  Q
    ||||||||||||||||||| || ||||||||| ||||  ||||||||||||||    
T  7052424 acttttttaaacaaaaattgtcctttaaaatcctaattcaatacactccctta 7052476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6196994 - 6196943
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||| |||||||    
T  6196994 ctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacac 6196943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 3608074 - 3608119
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  |||||||    
T  3608074 acttttttaaacaaaaattatcctttaaaatcctaattcaatacac 3608119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 23929361 - 23929406
Alignment:
Q  7 acttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||||||| ||||||||| |||||||||||| ||||| |||||||    
T  23929361 acttttttatacaaaaattgtcttttaaaatcctaatccaatacac 23929406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37719 - 37668
Alignment:
Q  1 ctcaaaacttttttaaacaaaaattatcttttaaaatcttaatcgaatacac 52  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||| |||||||    
T  37719 ctcaagacttttttaaacaaaaattatcctttaaaattctaatccaatacac 37668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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