View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17337_low_1 (Length: 408)
Name: NF17337_low_1
Description: NF17337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17337_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 395
Target Start/End: Original strand, 32572144 - 32572529
Alignment:
| Q |
10 |
gcacagaatccgaaatatgtaattgtttcatatgaaggcaaacataatcatggattgcctatgatcacnnnnnnnnntccaacaaactcaagtagtacaa |
109 |
Q |
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| T |
32572144 |
gcacagaatccgaaatatgtaattgtttcatatgaaggcaaacataatcatggattgcctatgatcacaaaaaaaaatccaacaaactcaagtactacca |
32572243 |
T |
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| Q |
110 |
gcaccacagtagtacgtgggaatgctagcattgtatcaccaccttatgcattgccaatgacccaacctttcacacctcttcaccgctctgaaagttatgg |
209 |
Q |
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| T |
32572244 |
gcacaacagtagcacgtgggaatgctagcatcgtaccaccaccttatgcattggcaatgacccaacctttcacacctcttcaccgctctgaaagttatgg |
32572343 |
T |
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| Q |
210 |
atcttatggtatgaactgtacttggcctaataataatcctttcttgaacatggtcaacaataccatgatggtgccttatagatatattaatggacaacat |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32572344 |
atcttatggtatgaactgtatttggcctaataataatcctttcttgaacatggtcaacaataccatgatgatgccttatagatatattaatggacaacat |
32572443 |
T |
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| Q |
310 |
tttcgagatttttatgctgctccttcaattgctgcctctcaagctgttcctagtattggtgaatttcaaatatctccaccgctacc |
395 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32572444 |
tttcgagattgttatgctgctccttcaattgctgcatctcaagctgttcctagtattggtgaatttcaaatatctccaccactacc |
32572529 |
T |
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